View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_52 (Length: 394)
Name: NF2158_low_52
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 18444347 - 18444711
Alignment:
| Q |
18 |
gttaatacttaaaaatctacaaattaattttcaaacaacttatcatatgtagactattgtcttgtgagtaaaaattctataaccaaacaagatttttgag |
117 |
Q |
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| T |
18444347 |
gttaatacttaaaaatctataaattaattttcaaacaacttatcatatgtagactattgtcttgtgagtacaaattctataaccaaacaagatttttgag |
18444446 |
T |
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| Q |
118 |
aatcaattctcatgtaaatcaacaacaccagttgaggataccaatatgggtttccgtcacagaaaaatacacatgacgtatcacacacaaatataataca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
18444447 |
aatcaattctcatgtaaatcaacaacaccagttgaggataccaatatgggtttcggtcacagaaaaatacacatgacatatcatacacaaatataataca |
18444546 |
T |
|
| Q |
218 |
tttaatgtaaggaacaatttcaactttaatttctttagtttgattaaaaaatatggactaagcagtgaacatctccattaatagttctaaactccaatgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18444547 |
tttaatgtaaggaacaatttcaactttaatttctttagtttgattaaaaaatatggactaagcattgaacatctccattaatagttctaaactccaatgc |
18444646 |
T |
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| Q |
318 |
aataacccaaaaactcacctatcatctgacatatatgatccatattcaccaatattacaatagta |
382 |
Q |
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|||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18444647 |
aataacccaaaatctcaccaatcatctgacatatatgattcatattcaccaatattacaatagta |
18444711 |
T |
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