View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_53 (Length: 378)
Name: NF2158_low_53
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 41658569 - 41658204
Alignment:
| Q |
1 |
ttggcctcctatatgcaagtaagaaatatacttatccatgatttgctttgtgtatatcatgaaatttaactatttaagttgtaaattcaacaaatattga |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658569 |
ttggcctcctgtatgcaagtaagaaatatacttatccatgatttgctttgtgtatatcatgaaatttaactatttaagttgtaaattcaacaaatattga |
41658470 |
T |
|
| Q |
101 |
tatcagtcttcattgactatcatttttgcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaagtgcttcttaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658469 |
tatcagtcttgattgactatcatttttgcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaagtgcttcttaa |
41658370 |
T |
|
| Q |
201 |
gaaactgaatgtgaaggagttaggcnnnnnnngagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcctgaacctgaa |
300 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41658369 |
gaaattgaatgtgaaggagttaggcagagaaagagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcctgcacctgaa |
41658270 |
T |
|
| Q |
301 |
ctagtatcaggagtaagtcctcattctgatataacatcaatcactgtccttctacaagatgatatt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658269 |
ctagtatcaggagtaagtcctcattctgatataacatcaatcactgtccttctacaagatgatatt |
41658204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 92 - 366
Target Start/End: Complemental strand, 14628782 - 14628507
Alignment:
| Q |
92 |
aaatattgatatcagtcttcattgactatcattttt-gcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaag |
190 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
14628782 |
aaatattgatatcagtcttgattgactatctttttttgcaggaatcaagcactagaatatatgaaatatgctgacgcttttattagaaagttgctaaaag |
14628683 |
T |
|
| Q |
191 |
tgcttcttaagaaactgaatgtgaaggagttaggcnnnnnnngagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| |||| ||||||| | | ||| ||||||||| ||||||||| |||||||| |
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|
| T |
14628682 |
tgcttcttaagaaactgaatgtgaaggagttagacaaagaaagagaatacgcgttaatgggtgcaatgatattaggcttcaattactaccctgcttgtcc |
14628583 |
T |
|
| Q |
291 |
tgaacctgaactagtatcaggagtaagtcctcattctgatataacatcaatcactgtccttctacaagatgatatt |
366 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
14628582 |
tgaacctgaacttgtatcaggagtaggtcctcattctgatatatcatcaatcactgtccttctacaagatgatatt |
14628507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 92 - 364
Target Start/End: Complemental strand, 14644587 - 14644314
Alignment:
| Q |
92 |
aaatattgatatcagtcttcattgactatcattttt-gcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaag |
190 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
14644587 |
aaatattgatatcagtcttgattgactatctttttttgcaggaatcaagcactagaatatatgaaatatgctgacgcttttattagaaaattgctacaag |
14644488 |
T |
|
| Q |
191 |
tgcttcttaagaaactgaatgtgaaggagttaggcnnnnnnngagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcc |
290 |
Q |
| |
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||||||||||||||||||||||||| ||||||| | |||||||||| ||||||| | | ||| ||||||||| ||||||||| |||||||| |
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| T |
14644487 |
tgcttcttaagaaactgaatgtgaacgagttagacaaagaaagagaacacgctttaatgggtgcaatgatattaggcttcaattactaccctgcttgtcc |
14644388 |
T |
|
| Q |
291 |
tgaacctgaactagtatcaggagtaagtcctcattctgatataacatcaatcactgtccttctacaagatgata |
364 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
14644387 |
tgaacctgaacttgtatcaggagtaggtcctcattctgatatatcatcaatcactgtccttctacaagatgata |
14644314 |
T |
|
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