View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_55 (Length: 369)
Name: NF2158_low_55
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 40871933 - 40872282
Alignment:
| Q |
1 |
atgcaacattcccttcaagaccaatgtatgtgtatggatcaatctgggatgcatctgcatgggctacagagaatggaaaatacaaagcaaattatactta |
100 |
Q |
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| T |
40871933 |
atgcaacattcccttcaagaccaatgtatgtgtatggatcaatctgggatgcatctgcatgggctacagagaatggaaaatacaaagcaaattatactta |
40872032 |
T |
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| Q |
101 |
ccaacccttcattggaagataccaaaacttcaaactacaaggttgtaccactgattccacctcctcatgccggccgccttctgtctcaccacccggctat |
200 |
Q |
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| T |
40872033 |
ccaacccttcattggaagataccaaaacttcaaactacaaggttgtaccactgattccacctcctcatgccggccaccttctgtctcaccacccggctat |
40872132 |
T |
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| Q |
201 |
ggcggcaagctgagccgtcagcaaaatgttgcaatgcaatgggtccaaaataattacttggtctatgattattgtcatgatcctaagagagaccatacac |
300 |
Q |
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| T |
40872133 |
ggcggcaagctgagccgtcagcaaaatgttgcaatgcaatgggtccaaaaaaattacttggtctatgattattgtcatgatcctaagagagaccatacac |
40872232 |
T |
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| Q |
301 |
ttactccagaatgctaatgtttagttcggttcgatttggggtgtgattta |
350 |
Q |
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| T |
40872233 |
ttactccagaatgctaatgtttagttcggttcaatttggggtgtgattta |
40872282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 21083856 - 21083717
Alignment:
| Q |
11 |
cccttcaagaccaatgtatgtgtatggatcaatctgggatgcatctgcatgggctacagagaatggaaaatacaaagcaaattatacttaccaacccttc |
110 |
Q |
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| T |
21083856 |
ccctacaagaccaatgtatctctatggatcaatttgggatgcatcttcttgggcaacagaagatggaaaatataaagctgattataaataccaacccttt |
21083757 |
T |
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| Q |
111 |
attggaagataccaaaacttcaaactacaaggttgtacca |
150 |
Q |
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| T |
21083756 |
gttggaaggtacactaacttcaaattacaaggttgtacca |
21083717 |
T |
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