View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_57 (Length: 367)
Name: NF2158_low_57
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_57 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 58 - 367
Target Start/End: Original strand, 12772254 - 12772569
Alignment:
| Q |
58 |
gttaacataatattggcatatgcataattgggaactgagtgggtgaagcttaagtaagaactaagactttagtggccataatctggaccgacattgt--- |
154 |
Q |
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| T |
12772254 |
gttaacataatattggcatatgcataattgggagctgagtgggtgaagcttaagtaagaactaagactttagtggccataatctggaccgacattgtgta |
12772353 |
T |
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| Q |
155 |
---atatatatatcttgcatgccatccacattgaaaattagagatttatttcattttttatgtcaacataacgaaatctaatttattgttaagctgtcaa |
251 |
Q |
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| T |
12772354 |
tatatatatatatcttgcatgccatccacattgaaaattagagatttatttcattttttatgtcaacataacgaaatctaatttattgttaagctgtcaa |
12772453 |
T |
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| Q |
252 |
tatattaaagaatgatatatagctgccgtagcagcaactatgtttttcatttttaaaagttatgataaaacaaaattttaaaaagggctacaggataata |
351 |
Q |
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| T |
12772454 |
tatattaaagaatgatatatagctgccgtagcagcaactatgtttttcatttttaaaagttatgataaaacaaaattttaaaaagggctacatgataata |
12772553 |
T |
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| Q |
352 |
ctctgtaataaaatat |
367 |
Q |
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| T |
12772554 |
ctctgtaataaaatat |
12772569 |
T |
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