View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_63 (Length: 344)
Name: NF2158_low_63
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_63 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 6 - 344
Target Start/End: Original strand, 34910008 - 34910346
Alignment:
| Q |
6 |
gcaggggggcctgttaaaccaaatatgctgcttccaaatgctggttggatggagcatccaaaaggacttatttgagtaggtgtatagccaaaacctccaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910008 |
gcaggggggcctgttaaaccaaatatgctgcttccaaatgctggttggatggagcatccaaaaggacttatttgagtaggtgtatagccaaaacctccaa |
34910107 |
T |
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| Q |
106 |
aagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcagatagaattagaaaactgcaaaatataataacaataaaaaaggc |
205 |
Q |
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| T |
34910108 |
aagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcagatagaattagaaaactgcaaaatataataacaataaaaaaggc |
34910207 |
T |
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| Q |
206 |
agaaaagtaagccaaaagatgctaatgaataccattattagatattaataaaagaaagatggcataaactagctaatacaaatcttagtcgttatgtaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910208 |
agaaaagtaagccaaaagatgctaatgaataccattattagatattaataaaagaaagatggcataaactagctaatacaaatcttagtcgttatgtaat |
34910307 |
T |
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| Q |
306 |
ctttaggtctttaaaaagaaccgtaaattagcatcgact |
344 |
Q |
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| T |
34910308 |
ctttaggtctttacaaagaaccgtaaattagcatcgact |
34910346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 6 - 323
Target Start/End: Complemental strand, 28543569 - 28543241
Alignment:
| Q |
6 |
gcaggggggcctgttaaaccaaatatgctgcttccaaatgctggttgg---------atggagcatccaaaaggacttatttgagtaggtgtatagccaa |
96 |
Q |
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| T |
28543569 |
gcaggggtgcctgttaaaccaaatatgttgcttccaaatactggttgtgatggttgtatggcacatccaaaaggacttatctgagtaggcatcgagccaa |
28543470 |
T |
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| Q |
97 |
aacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcagatagaattagaaaactgcaaaatataataa---c |
193 |
Q |
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| T |
28543469 |
aacctccaaaagaaggctcctggcaaaaggatgatgatcctgggaaggaagagagtcggttttcaaatagaattagaaaac-gcaaaatataataataac |
28543371 |
T |
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| Q |
194 |
aataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagatattaataaaagaaagatggcataaactagctaatacaaatcttag |
293 |
Q |
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| T |
28543370 |
aataaaaaagggagaaaactaagccaaaagatgctaatgattaccattattagatattaacaaaagaaagatgacataaactagctaacacatatcttag |
28543271 |
T |
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| Q |
294 |
tcgttatgtaatctttaggtctttaaaaag |
323 |
Q |
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| T |
28543270 |
tcgttatgtaatctttaggtctttaaaaag |
28543241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 69 - 301
Target Start/End: Complemental strand, 28545732 - 28545497
Alignment:
| Q |
69 |
ggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcagatagaa |
168 |
Q |
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|||||| |||||||||| ||| ||||||||||| ||||||||||| |||||||||||| ||| |||||||||| |||| | | |||||| | |||||||| |
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| T |
28545732 |
ggacttgtttgagtaggagtagagccaaaacctacaaaagcaggctcctgaccaaagagtgatgatcctgggagggaacaaacttggtt-taagatagaa |
28545634 |
T |
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| Q |
169 |
ttagaaaactgcaaaatataataa--caataaaaaa--ggcagaaaagtaagccaaaagatgctaatgaataccattattagatattaataaaagaaaga |
264 |
Q |
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| T |
28545633 |
ttagaaaactacaaaatataataatacaataaaaaaaaggcagaaacgtaagccaaaagatgctaatatttaccattattagctattaataaaagaaaga |
28545534 |
T |
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| Q |
265 |
tggcataaactagctaatacaaatcttagtcgttatg |
301 |
Q |
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| T |
28545533 |
tgacataaactagctaatacgaatcttagtctttatg |
28545497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 62 - 325
Target Start/End: Original strand, 34896265 - 34896532
Alignment:
| Q |
62 |
tccaaaaggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctca |
161 |
Q |
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|||||| |||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||| | ||| |||||| ||||| | |||||| ||||| |
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| T |
34896265 |
tccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgaccaaacactgatgatcctataaaggagaaaagttggatctca |
34896364 |
T |
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| Q |
162 |
gatagaattagaaaactgcaaaatataataa--------caataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagatattaa |
253 |
Q |
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| T |
34896365 |
gttagaattagaaaactgcaaaatctaataatataaaaacaataaaa-aggcagaaaagtaagccaaaagatgctaatgattaccattattaga---taa |
34896460 |
T |
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| Q |
254 |
taaaagaaagatggcataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttaaaaagaa |
325 |
Q |
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| T |
34896461 |
tgaaagaaggacgacataaactagctaatacaaatctcagttgttacgtaatctttaggtcttcaaaaagaa |
34896532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 34904989 - 34905184
Alignment:
| Q |
62 |
tccaaaaggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctca |
161 |
Q |
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| T |
34904989 |
tccaaatggacttgtttgagtaggattagagccaaaacctccaaaagcaggcttctgaccaaacgctgatgatcctataaagtagaaaagttggttctca |
34905088 |
T |
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| Q |
162 |
gatagaattagaaaactgcaaaatataataa--------caataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagatat |
250 |
Q |
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| T |
34905089 |
gttagaattagaaaactgcaaaatctaataatataaaaacaataaaa-aggcagataagtaagccaaaagatgccaatgattaccattattagatat |
34905184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 34896183 - 34896213
Alignment:
| Q |
22 |
aaccaaatatgctgcttccaaatgctggttg |
52 |
Q |
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| T |
34896183 |
aaccaaatatgctgcttccaaatgctggttg |
34896213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 34905183 - 34905237
Alignment:
| Q |
281 |
atacaaatcttagtcgttatgtaatctttaggtctttaaaaagaaccgtaaatta |
335 |
Q |
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| T |
34905183 |
atacaaatctcagttgtcatgtaatctttaggtcttcaaaaagaaatgtaaatta |
34905237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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