View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_64 (Length: 340)
Name: NF2158_low_64
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 34219893 - 34219582
Alignment:
| Q |
16 |
aatatcctcaaagctatggaataccataagggttctcacgtagattgtggatttaaaaagaaaaagttgatataacgacatgcttacactttaatcttgt |
115 |
Q |
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| T |
34219893 |
aatatcctcaaagctatggaataccataagggttctcacatggattgtggatttaaaaagaaaaagttgatataacgacatgcttacactttaatcttgt |
34219794 |
T |
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| Q |
116 |
atcaattgcgttatatctagtctatttaaagatgtgttaatagctaagtgattgaactcaagtggttaatggactccaatcataagagaatcacttggca |
215 |
Q |
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| T |
34219793 |
atcaattgtgttatacctagtttatttaaagatgtgttaataactaagtgattgaactcaagtggttaacggactccaatcataagagaatcagttggcg |
34219694 |
T |
|
| Q |
216 |
aacctaagttcaaatcttgattgaagttagtcaaattttgctcacttatggccaaatgaactccagatttttaggggttgtccatttacctaggaatttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
34219693 |
aacctaagttcaaatcttgattgaagttagtcaaattttgctcacttatggccaaatgaacttcaaatttttaggggttgtccatttacctaggaatttg |
34219594 |
T |
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| Q |
316 |
aatgttaaaact |
327 |
Q |
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|||||||||||| |
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| T |
34219593 |
aatgttaaaact |
34219582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 37781584 - 37781616
Alignment:
| Q |
160 |
taagtgattgaactcaagtggttaatggactcc |
192 |
Q |
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| T |
37781584 |
taagtgattgaactcaagtggttaatgaactcc |
37781616 |
T |
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