View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_65 (Length: 331)

Name: NF2158_low_65
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_65
NF2158_low_65
[»] chr8 (1 HSPs)
chr8 (18-310)||(30017209-30017498)
[»] chr5 (2 HSPs)
chr5 (129-183)||(17734030-17734084)
chr5 (129-186)||(17933193-17933250)
[»] chr1 (1 HSPs)
chr1 (151-185)||(43391574-43391608)
[»] chr7 (2 HSPs)
chr7 (131-185)||(5627595-5627651)
chr7 (132-185)||(25314070-25314123)
[»] chr2 (1 HSPs)
chr2 (141-185)||(29621803-29621847)


Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 30017209 - 30017498
Alignment:
Q  18 gaatagtggattggaaaacccgtagaacccaaagtctggaggtatgtcatactcgaattatattcttgctttagacatttttcttcttagttttataaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  30017209 gaatagtggattggaaaacccgtagaacccaaagtctggaggtatgtcat---cgaattatattcttgctttagacatttttcttcttagttttataaaa 30017305  T
Q  118 tcttataatggaccagtgttgttaaatagcagttatagcatggctgaatttgaacaaatcgctattgtgtaaaaacatattgtgctcatgcaaagtggat 217  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30017306 tcttataatggactagtgttgttaaatagcggttatagcatggctgaatttgaacaaatcgctattgtgtaaaaacatattgtgctcatgcaaagtggat 30017405  T
Q  218 gaatgatattttctctatacattacttgttagtagtttctcattctttgaggcatgcacaatttgaagtctgaattccctaaaccagatgatt 310  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30017406 gaatgatattttctctatacattactttttagtagtttctcattctttgaggcatgcacaatttgaagtctgaattccctaaaccagatgatt 30017498  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 17734030 - 17734084
Alignment:
Q  129 accagtgttgttaaatagcagttatagcatggctgaatttgaacaaatcgctatt 183  Q
    ||||||||||| ||||||| | |||||||| || ||||||| |||||||||||||    
T  17734030 accagtgttgtcaaatagcggctatagcatagcagaatttgcacaaatcgctatt 17734084  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 17933250 - 17933193
Alignment:
Q  129 accagtgttgttaaatagcagttatagcatggctgaatttgaacaaatcgctattgtg 186  Q
    ||||||||||| | ||||| | |||||||| || |||||||||||||||| |||||||    
T  17933250 accagtgttgtcatatagcggctatagcatagcggaatttgaacaaatcgttattgtg 17933193  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 43391608 - 43391574
Alignment:
Q  151 tatagcatggctgaatttgaacaaatcgctattgt 185  Q
    ||||||||||| |||||||||||||||||||||||    
T  43391608 tatagcatggcagaatttgaacaaatcgctattgt 43391574  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 5627651 - 5627595
Alignment:
Q  131 cagtgttgttaaatagcagt--tatagcatggctgaatttgaacaaatcgctattgt 185  Q
    ||||||||||||||||||||  |||||||| ||  |||||||||| |||||||||||    
T  5627651 cagtgttgttaaatagcagtgttatagcatagcaaaatttgaacagatcgctattgt 5627595  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 25314123 - 25314070
Alignment:
Q  132 agtgttgttaaatagcagttatagcatggctgaatttgaacaaatcgctattgt 185  Q
    |||||||| ||||||| |||||||||| |  |||||||||||||||| ||||||    
T  25314123 agtgttgtcaaatagcggttatagcatagaggaatttgaacaaatcgttattgt 25314070  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 29621803 - 29621847
Alignment:
Q  141 aaatagcagttatagcatggctgaatttgaacaaatcgctattgt 185  Q
    |||||||||||||||||| ||  |||||||||||||| |||||||    
T  29621803 aaatagcagttatagcatagcaaaatttgaacaaatcactattgt 29621847  T

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