View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_66 (Length: 328)

Name: NF2158_low_66
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_66
NF2158_low_66
[»] chr3 (4 HSPs)
chr3 (115-319)||(2683795-2683996)
chr3 (1-117)||(2685121-2685236)
chr3 (113-224)||(2693739-2693850)
chr3 (143-181)||(25532039-25532077)
[»] chr8 (1 HSPs)
chr8 (113-181)||(8366510-8366578)
[»] chr7 (4 HSPs)
chr7 (113-181)||(9595649-9595717)
chr7 (113-181)||(9646612-9646680)
chr7 (122-181)||(7843079-7843138)
chr7 (113-181)||(9647148-9647216)
[»] chr4 (9 HSPs)
chr4 (113-181)||(39488363-39488431)
chr4 (113-181)||(13518173-13518241)
chr4 (113-181)||(15019496-15019564)
chr4 (113-181)||(9167056-9167124)
chr4 (113-181)||(15017856-15017924)
chr4 (113-177)||(19459737-19459801)
chr4 (113-177)||(19460563-19460627)
chr4 (113-181)||(19458032-19458100)
chr4 (117-174)||(19456334-19456390)
[»] scaffold0269 (1 HSPs)
scaffold0269 (113-181)||(1616-1684)
[»] chr5 (3 HSPs)
chr5 (113-181)||(244654-244722)
chr5 (113-181)||(29949987-29950055)
chr5 (113-181)||(29951625-29951693)
[»] chr2 (1 HSPs)
chr2 (113-181)||(22300109-22300177)
[»] chr1 (3 HSPs)
chr1 (113-181)||(20190643-20190711)
chr1 (113-181)||(24157267-24157335)
chr1 (122-181)||(36233708-36233767)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 2683996 - 2683795
Alignment:
Q  115 gattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctgaattttacaaaagaggttaaaaaataaacataaa 214  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2683996 gattctgaaactcttagaaaatgaacggaaatgcagcta---atttcaataatgttttggtggctgaattttacaaaagaggttaaaaaataaacataaa 2683900  T
Q  215 attagaggtgaactatcttgtctgaacttcctttttattgtgcgccacacgtttttctctccagattcttcatgattccttccacttgatttttctaaga 314  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  2683899 attagaggtggactatcttgtctgaacttcctttttattgtgcgccccacgtttttctctccagattcttcatgattctttccacttgatttgtctaaga 2683800  T
Q  315 attat 319  Q
    |||||    
T  2683799 attat 2683795  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 2685236 - 2685121
Alignment:
Q  1 gtgtatggcacaacattaatttgatttatacatggacaaagtctcatttcaacatctaaaaccttcacataaacaacttgaaagagatattgagtgtggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2685236 gtgtatggcacaacattaatttgatttatacatggacaaagtctcatttcaacatctaaaaccttcacataaacaactcgaaagagatattgagtgtggt 2685137  T
Q  101 acaatcacatccttgat 117  Q
    ||||| |||||||||||    
T  2685136 acaat-acatccttgat 2685121  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 2693850 - 2693739
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctgaattttacaaaagaggttaaaaaataaacata 212  Q
    |||||||||||||||||||||||| || | ||||||| | ||||||| |||| ||||||||||  |||||||||||||||||||||| |||||||||||     
T  2693850 ttgattctgaaactcttagaaaataaaagtaaatgcaaccactaattgcaattatgttttggtaactgaattttacaaaagaggttacaaaataaacatg 2693751  T
Q  213 aaattagaggtg 224  Q
    |||| |||||||    
T  2693750 aaataagaggtg 2693739  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 25532077 - 25532039
Alignment:
Q  143 aaatgcagctactaatttcaataatgttttggtggctga 181  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  25532077 aaatgcagccactaattacaataatgttttggtggctga 25532039  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 8366578 - 8366510
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  8366578 ttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatgttttggtggctga 8366510  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 9595649 - 9595717
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  9595649 ttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatgttttggtggctga 9595717  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 9646612 - 9646680
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  9646612 ttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatgttttggtggctga 9646680  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 7843138 - 7843079
Alignment:
Q  122 aaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  7843138 aaactcttagaaaatgaaaggaaatgcagccactaattacaataatgttttggtggctga 7843079  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 9647148 - 9647216
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||    
T  9647148 ttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataattttttggtggctga 9647216  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 39488363 - 39488431
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  39488363 ttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatgttttggtggctga 39488431  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 13518173 - 13518241
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||    
T  13518173 ttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataattttttggtggctga 13518241  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 15019496 - 15019564
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||    
T  15019496 ttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttttggtggctga 15019564  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 9167124 - 9167056
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| |||||| || | ||||||| |||||||||||||||||||||    
T  9167124 ttgactctaaaactcttagaaaatgaaaggaaatccaaccactaattacaataatgttttggtggctga 9167056  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 15017856 - 15017924
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||    
T  15017856 ttgactctaaaactcttagaaaatgaaagaaaatgcaaccactaattacaataatgttttggtggctga 15017924  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 19459801 - 19459737
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtgg 177  Q
    |||||||| |||||||||||||||||| ||||||||| | | ||||| |||||||||||||||||    
T  19459801 ttgattctaaaactcttagaaaatgaaaggaaatgcatccattaattgcaataatgttttggtgg 19459737  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 19460563 - 19460627
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtgg 177  Q
    |||||||| |||||||| |||||||||  |||||||||| ||||||| |||||||||||||||||    
T  19460563 ttgattctaaaactctttgaaaatgaaatgaaatgcagccactaattacaataatgttttggtgg 19460627  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 19458100 - 19458032
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||||||| | |||||||||||||||| |||| || ||| ||||||| |||||||||||| ||||||||    
T  19458100 ttgattctaacactcttagaaaatgaaaggaagtgtagccactaattccaataatgttttagtggctga 19458032  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 19456390 - 19456334
Alignment:
Q  117 ttctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttgg 174  Q
    |||| ||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||    
T  19456390 ttctaaaactcttagaaa-tgaaaggaaatgcatctactaattgcaataatgttttgg 19456334  T

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Target: scaffold0269 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 1616 - 1684
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||    
T  1616 ttgactctaaaactcttagaaaatgaaaggaaatgcagccattaattacaataatgttttggtggctga 1684  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 244654 - 244722
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||    
T  244654 ttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttttggtggctga 244722  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 29950055 - 29949987
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||    
T  29950055 ttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttttggtggctga 29949987  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 29951693 - 29951625
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||    
T  29951693 ttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttttggtggctga 29951625  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 22300109 - 22300177
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||    
T  22300109 ttgactctaaaactcttagaaaatgaaaggaaatgcagccattaattacaataatgttttggtggctga 22300177  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 20190643 - 20190711
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||||    
T  20190643 ttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatgatttggtggctga 20190711  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 24157267 - 24157335
Alignment:
Q  113 ttgattctgaaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||| ||| |||||||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||    
T  24157267 ttgactctaaaactcttagaaaatgaaagcaaatgcagccactaattacaataatgttttggtggctga 24157335  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 36233767 - 36233708
Alignment:
Q  122 aaactcttagaaaatgaacggaaatgcagctactaatttcaataatgttttggtggctga 181  Q
    |||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||    
T  36233767 aaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttttggtggctga 36233708  T

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