View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_67 (Length: 326)
Name: NF2158_low_67
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 161 - 319
Target Start/End: Complemental strand, 37534798 - 37534643
Alignment:
| Q |
161 |
caagtcttcactcaaattacaaattttattcaaggtttatctttattgccaaggtgatcaaccaataagattctagcattgtttactcttcgacaaatgg |
260 |
Q |
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| T |
37534798 |
caagtcgtcactcaaattacaaattttattcaaggtttatctttattgccaaggtgatcaaccaataagattctagcattgtttactcttcgacaaatgg |
37534699 |
T |
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| Q |
261 |
gtatatctcatacctaaagttacaacaacttccaccaacaactctacctccttcatttc |
319 |
Q |
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| T |
37534698 |
gtatatctcatacctaaagtta---caacttccaccaacaactctacctccttcttttc |
37534643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 37534931 - 37534816
Alignment:
| Q |
19 |
ctcatttccattggttttctaagtgtacaaatgtgtggagcactaaatcaacttgcaataatggaaatcgcattcaacnnnnnnncttccataatttaaa |
118 |
Q |
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| T |
37534931 |
ctcatttccattggttttctaagtgtacaaatgtgtggagcactaaatcaacttgcaataatggaaatcgcattcaactttttttcttacataatttaaa |
37534832 |
T |
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| Q |
119 |
ttggattttgcactat |
134 |
Q |
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| T |
37534831 |
ttggattttgcactat |
37534816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 319
Target Start/End: Complemental strand, 37531390 - 37531275
Alignment:
| Q |
201 |
ctttattgccaaggtgatcaaccaataagattctagcattgtttactcttcgacaaatgggtatatctcatacctaaagttacaacaacttccaccaaca |
300 |
Q |
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| T |
37531390 |
ctttattgacaaggaggtcaaccaataaaattctagcactaattactctttaacaaatgggtatatctcatatcgaaagtt---gcagcttcccccaaca |
37531294 |
T |
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| Q |
301 |
actctacctccttcatttc |
319 |
Q |
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| T |
37531293 |
actctacctccttcttttc |
37531275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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