View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_68 (Length: 324)
Name: NF2158_low_68
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 46464943 - 46465253
Alignment:
| Q |
1 |
tcggtaaattctacatattgtcccaactaatgtattgtatcagcaactagtgtcccaaccaacatgattttgaaagaaaacatctagttggag----aaa |
96 |
Q |
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| T |
46464943 |
tcggtaaattctacatattgtcccaactaatgtattgtatcaacaactagtgtcccaaccaacatgattttgaaagaaaacatctagttggagcaaaaaa |
46465042 |
T |
|
| Q |
97 |
gnnnnnnnnnngtcttaaacttatagagttttagtttcttaggaaacttaggatcattaagaaccaccgattatcttatctacattgcaatagaattttc |
196 |
Q |
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| T |
46465043 |
aaaaaaaaaaagtcttaaacttatagagttttagtttcttaggaaacttaggatcattaagaaccaccgattatcttatctacattgcaatagaattttc |
46465142 |
T |
|
| Q |
197 |
tagacaatacgaaaatagtaagcagtaaaaacaacaattgaggttttacacattccaagtggacaaccactcttataacctcaaattctcagcctagcac |
296 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46465143 |
taggcaatacgaaaatagtaagcagtaaaaacaacaattgaggttttacacattccaagtggacaaccactcttataagctcaaattctcagcctagcac |
46465242 |
T |
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| Q |
297 |
tagatccacgt |
307 |
Q |
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||||||||||| |
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| T |
46465243 |
tagatccacgt |
46465253 |
T |
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