View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_low_69 (Length: 323)
Name: NF2158_low_69
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_69 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 33 - 309
Target Start/End: Complemental strand, 22945187 - 22944912
Alignment:
| Q |
33 |
tgattgaaattatggcagaat--ttagcatgcgagaatgagcaggagatgatccaaatccaaagaatgaaaaagcagatgaaaagtctaagataactaat |
130 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
22945187 |
tgattgaaattatggcagaatggttagcatgagagaatgagcaggagatgatccaaatccaaagaatggaaaagtagatgaaaagtctaagataactaat |
22945088 |
T |
|
| Q |
131 |
atgttgttggataactacaattttaattgttgtctattattttggcgtcttgtagaaatgttgatggatggtgttaaaagagtttcagtgatgtacttac |
230 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
22945087 |
atgttgtttgataactacacttttaactgttgtctattattttggcgtcttctagaaatgttgatggataatgtt--aagagtttcagtgatgtacttac |
22944990 |
T |
|
| Q |
231 |
t-ggactaggatatcgcaacatgagtcagggacaactatagttacatttgctctgaccgattgaagcttgtggaagaaac |
309 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22944989 |
taggactaggatatcgcaacacgagtcaggggcaac--tagttacatttgctatgaccgattgaagcttgtggaagaaac |
22944912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University