View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_7 (Length: 806)
Name: NF2158_low_7
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 677; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 6 - 790
Target Start/End: Complemental strand, 36455888 - 36455101
Alignment:
| Q |
6 |
catcatcacaaacaacaatagactcaaactcatgatgcttaatctcccatactttagccttgtaaaatctaactccgttaaaaacacaacctttaaccaa |
105 |
Q |
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| T |
36455888 |
catcatcacaaacaacaatagactcaaactcatgatgcttaatctcccatactttagccttgtaaaatctaactccgttaaaaacacaacctttaaccaa |
36455789 |
T |
|
| Q |
106 |
tttctccttaagtttcttcctactaacccttccatagcaacgatccaaatactttgttttgttatcatcgatataaatagaagccataggccatgtttta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455788 |
tttctccttaagtttcttcctactaacccttccatagcaacgatccaaatactttgttttgttatcatcgatataaatagaagccataggccatgtttta |
36455689 |
T |
|
| Q |
206 |
tctaaacaatcttctagcccaagtccttcaaactcatccaaccacacaccatagttgtttggccacatcgatagagggttaggatcaacacaacaaactt |
305 |
Q |
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| T |
36455688 |
tctaaacaatcttctagcccaagtccttcaaactcatccaaccacacaccatagttatttggccacatagatagagggttaggatcaacacaacaaacct |
36455589 |
T |
|
| Q |
306 |
tgattccataaagggaaacttgttccgcaaggcgaatgcctgcagggccagcaccggctatgaccacgtcgaattgagaacgatcagaagggtggtgcca |
405 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36455588 |
tgattccataaagggaaacttgttccgcaaggcgaattcctgcagggccagcaccgactatgatcacgtcgaattgagaacgatcagaagggtggtgcca |
36455489 |
T |
|
| Q |
406 |
tggaagatcgaaatctaaggcttcgggttgatactcgggttttaagtcaaggaaatttccaaactttttggtactgttgatcatggtattagtttttctt |
505 |
Q |
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| T |
36455488 |
tggaagatcgaaatctaaggcttcgggttgatactcggattttaagtcaaggaaatttccaaactttttggtactgttgatcatggtattagtttttctt |
36455389 |
T |
|
| Q |
506 |
gcagaaggaagtgatattgtttgatgggttttgaggaaagggaatgttgaaggtgtgaattggtgagtttttgttggaggcggtggagaaattaacataa |
605 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455388 |
gaagaaggaagtgatattgtttgatgggttttgaggaaagggaatgttgaaggtgtgagttggtgagtttttgttggaggcggtggagaaattaacataa |
36455289 |
T |
|
| Q |
606 |
gactagttcccatgttttgcggaagggnnnnnnnnnnnnnnnnnnngattgtggtcagattgaaggagaaatgattgtgtggaaaagaggactat---aa |
702 |
Q |
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| T |
36455288 |
gactagttcccatcttttgcggaagggtgttttttgtttgttttgtgattgtggtcagattgaaggagaaatgattgtgtggaaaagaggactataacaa |
36455189 |
T |
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| Q |
703 |
ctgtgatattttgtttttggtaatattaatgaacagaacagtaaagagaagtttggtaatgaaaaagatgtgtatggagacaaaaagg |
790 |
Q |
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| T |
36455188 |
ctgtgatattttgtttttggtaatattaatgaacagaacagtaaagagaagtttggtaatgaaaaagatgtgtatggagacaaaaagg |
36455101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 477
Target Start/End: Original strand, 36462677 - 36463148
Alignment:
| Q |
6 |
catcatcacaaacaacaatagactcaaactcatgatgcttaatctcccatactttagccttgtaaaatctaactccgttaaaaacacaacctttaaccaa |
105 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| ||| | | | | || ||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
36462677 |
catcgtcacaaacaacaatagactcaaactcatgatgctcaatttgcattgcctttgccttataaaatctaacaccgttaaaaacacaacctttaaccaa |
36462776 |
T |
|
| Q |
106 |
tttctccttaagtttcttcctactaacccttccatagcaacgatccaaatactttgttttgttatcatcgatataaatagaagccataggccatgtttta |
205 |
Q |
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||||| ||||||||| | || |||||||||| || ||||||||||||||||| || | ||||||| ||||||||||||| ||||||||||||||| |
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| T |
36462777 |
gttctctttaagtttccttttattaacccttccgtaacaacgatccaaatacttggtggttctatcatcaatataaatagaagttataggccatgtttta |
36462876 |
T |
|
| Q |
206 |
tctaaacaatcttctagcccaagtccttcaaactcatccaaccacacaccatagttgtttggccacatcgatagagggttaggatcaacacaacaaactt |
305 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||| || || |||||||||||||||||||||||||| | |
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| T |
36462877 |
tctaaacaatcttctagcccaagaccttcaaactcatcaaaccaaacaccatagttattaggccagatagacagagggttaggatcaacacaacaaacct |
36462976 |
T |
|
| Q |
306 |
tgattccataaagggaaacttgttccgcaaggcgaatgcctgcagggccagcaccggctatgaccacgtcgaattgagaacgatcagaagggtggtgcca |
405 |
Q |
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| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||| ||| | ||| || ||||||||||||| | | |
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| T |
36462977 |
tcattccataaagggaaacttgttctgcaaggcgaattcctgcggggccagcaccgattatgatcacattgaaacaagtgtgatcagaagggtgaaacaa |
36463076 |
T |
|
| Q |
406 |
tggaagatcgaaatctaaggcttcgggttgatactcgggttttaagtcaaggaaatttccaaactttttggt |
477 |
Q |
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|||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
36463077 |
tggaaggtcgaaatccaaggcttcgggttgatactcggattttaagtcaagaaaatttccaaactttctggt |
36463148 |
T |
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