View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_low_70 (Length: 318)
Name: NF2158_low_70
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_70 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 30349872 - 30350161
Alignment:
| Q |
18 |
gaggagattggtcgccacatgtttgtccacaaggacatgatccgcacttgatttcggtgtattctggtggcggaacaaccaccggatagtctaacttctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30349872 |
gaggagattggtcgccacatgtttgtccacaaggacatgatccgcacttgatttcggtgtactctggtggcggaacaaccaccggaaagtctaacttctt |
30349971 |
T |
|
| Q |
118 |
tggagatgttattgtgatttcttcggttgaagaagaaaatgaaatacatataatgagtaacactattgtagccttttgaatcctcaaattttgagttgga |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30349972 |
tggagatgttattatgatttcttcggttgaagaagaaaatgaaatacatataatgagtaacactattgtagccttttgaatcctcaaattttgagttgga |
30350071 |
T |
|
| Q |
218 |
gaagccattctcttgagtagcaaggacttgattgagtctaagtgttgaaataaaagagagtgagagagggagagaaaatatattaagaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30350072 |
gaagccattctcttgagtagcaaggacttgattgagtctaagtgttgaaataaaagagagtgagagagggagagaaaatatattaagaat |
30350161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University