View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_71 (Length: 313)
Name: NF2158_low_71
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 40279995 - 40280281
Alignment:
| Q |
11 |
cacagatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgca |
110 |
Q |
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| T |
40279995 |
cacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgca |
40280094 |
T |
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| Q |
111 |
ttcaagagttccagagatagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaagtggcccatgggaatggcggt |
210 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
40280095 |
ttcaagagttccagagatagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcgaagtggcccatgggaatggtggt |
40280194 |
T |
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| Q |
211 |
ggaactgtcatgctcttagttagtcgtctctttttcacaggttggtgctttggtagaatacgttgacgtcgtcccagcaccttattg |
297 |
Q |
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| T |
40280195 |
ggaactgccatgctcttagttagtcgtctctttttcacaggttggtgctttggtagaatacgttgacgtcgtcccagcaccttattg |
40280281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 40458355 - 40458069
Alignment:
| Q |
11 |
cacagatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgca |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458355 |
cacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgca |
40458256 |
T |
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| Q |
111 |
ttcaagagttccagagatagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaagtggcccatgggaatggcggt |
210 |
Q |
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| T |
40458255 |
ttcaagagttccagagatagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcgaagtggcccatgggaatggtggt |
40458156 |
T |
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| Q |
211 |
ggaactgtcatgctcttagttagtcgtctctttttcacaggttggtgctttggtagaatacgttgacgtcgtcccagcaccttattg |
297 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458155 |
ggaactgccatgctcttagttagtcgtctctttttcacaggttggtgctttggtagaatacgttgacgtcgtcccagcaccttattg |
40458069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 40284956 - 40285165
Alignment:
| Q |
11 |
cacagatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgca |
110 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40284956 |
cacacatctcattccttctttcctctatgaaccttgtcactttcctgaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagaatttgca |
40285055 |
T |
|
| Q |
111 |
ttcaagagttccagagatagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaagtggcccatgggaatggcggt |
210 |
Q |
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||||||||||||||||||||||| |||||||| ||| ||||||| |||||| ||||||| |||| | || ||||| ||||| |||||| |||| || ||| |
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| T |
40285056 |
ttcaagagttccagagatagtctggagtttcaatacagataacaagtggtccagtgtgtacaaggtagcgcgttttgaagttgcccataggaacggtggt |
40285155 |
T |
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| Q |
211 |
ggaactgtca |
220 |
Q |
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|| ||||||| |
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| T |
40285156 |
ggtactgtca |
40285165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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