View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_73 (Length: 305)

Name: NF2158_low_73
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_73
NF2158_low_73
[»] chr2 (9 HSPs)
chr2 (20-267)||(45277638-45277885)
chr2 (20-228)||(7880521-7880732)
chr2 (90-268)||(19677796-19677975)
chr2 (20-262)||(90486-90733)
chr2 (129-228)||(29303005-29303103)
chr2 (20-264)||(2565317-2565566)
chr2 (20-264)||(18781332-18781581)
chr2 (20-85)||(19674499-19674565)
chr2 (131-228)||(9057207-9057304)
[»] chr8 (6 HSPs)
chr8 (20-267)||(6927693-6927941)
chr8 (20-268)||(28508958-28509209)
chr8 (20-266)||(11994867-11995117)
chr8 (138-224)||(2807883-2807969)
chr8 (60-222)||(24682371-24682538)
chr8 (150-264)||(2879367-2879482)
[»] chr5 (4 HSPs)
chr5 (20-267)||(38490744-38490994)
chr5 (20-267)||(7850019-7850261)
chr5 (20-262)||(14651894-14652140)
chr5 (139-225)||(41458426-41458512)
[»] chr7 (6 HSPs)
chr7 (20-264)||(48238158-48238404)
chr7 (20-268)||(8069276-8069528)
chr7 (20-268)||(6189552-6189802)
chr7 (20-267)||(48636402-48636649)
chr7 (23-266)||(19312095-19312343)
chr7 (116-228)||(135502-135616)
[»] chr6 (4 HSPs)
chr6 (20-228)||(33516788-33516998)
chr6 (20-266)||(14677428-14677678)
chr6 (138-228)||(12269223-12269313)
chr6 (147-228)||(11681059-11681142)
[»] chr1 (4 HSPs)
chr1 (19-268)||(28945966-28946219)
chr1 (20-267)||(42721937-42722184)
chr1 (20-267)||(36296400-36296649)
chr1 (20-228)||(26221383-26221595)
[»] chr4 (4 HSPs)
chr4 (20-268)||(28143602-28143854)
chr4 (20-267)||(51337349-51337598)
chr4 (20-264)||(14192473-14192722)
chr4 (142-228)||(20152551-20152638)
[»] chr3 (4 HSPs)
chr3 (20-267)||(31885104-31885353)
chr3 (20-228)||(23045071-23045280)
chr3 (20-264)||(6024915-6025164)
chr3 (150-228)||(6583808-6583886)
[»] scaffold0743 (1 HSPs)
scaffold0743 (48-228)||(3490-3672)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 45277885 - 45277638
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcagcc 118  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  45277885 ggcccatgccggtagggggccct-aattttttttattggtgggggtgtatatagtaagaattggttttatgggggtttatatagtaaaatattggcagcc 45277787  T
Q  119 cgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  45277786 cgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctatat 45277687  T
Q  219 acaccctcccnnnnnnnttggccatttgtttctaataatgtgccaagaa 267  Q
    ||||||||||       |||||| |||||||||||||||||||||||||    
T  45277686 acaccctcccaaaaaaattggccctttgtttctaataatgtgccaagaa 45277638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 7880732 - 7880521
Alignment:
Q  20 ggcccatgccggtagggggccctta-aaattttttattgttgggggtgtatatagtaagaattggttata-tggggtttatatagtaaaatattgtca-g 116  Q
    ||||||||||| ||||||||||| |    |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| || |    
T  7880732 ggcccatgccgttagggggccctaattttttttttattggtgggggtgtatatagtaagaattggttttattggggtttatatagtaaaatattggcagg 7880633  T
Q  117 cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  7880632 cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctat 7880533  T
Q  217 atacaccctccc 228  Q
    ||||||||||||    
T  7880532 atacaccctccc 7880521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 90 - 268
Target Start/End: Original strand, 19677796 - 19677975
Alignment:
Q  90 ggggtttatatagtaaaatattgtcag-cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatat 188  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19677796 ggggtttatatagtaaaatattggcaggcccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatat 19677895  T
Q  189 ataccccatatgaaacaaagctttctatatacaccctcccnnnnnnnttggccatttgtttctaataatgtgccaagaac 268  Q
    ||| | ||||||||| |||||||||||||||||||||||        |||||| ||||||||||||||||||||||||||    
T  19677896 ataacgcatatgaaaaaaagctttctatatacaccctccaaaaaaaattggccctttgtttctaataatgtgccaagaac 19677975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 90733 - 90486
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca--- 115  Q
    ||||||||||||||||||||||| ||||    |||||| ||||||||||||||| ||||||||||| | ||||| |||||||||||||||||  | |       
T  90733 ggcccatgccggtagggggccctaaaaaaaaattattggtgggggtgtatatagaaagaattggttttttgggggtttatatagtaaaatatactaacag 90634  T
Q  116 gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttct 214  Q
    |||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||| ||||    
T  90633 gcccgaaacattgatatgaaaatctgggctggagtctgttattgttttggcctttttgatgcaatttgctatatatacaccatat-aaacaaagccttct 90535  T
Q  215 atatacaccc-tcccnnnnnnnttggccatttgtttctaataatgtgcc 262  Q
    |||||||||| |||        |||||||||||||||||||||||||||    
T  90534 atatacacccttccgaaaaaaattggccatttgtttctaataatgtgcc 90486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 29303005 - 29303103
Alignment:
Q  129 catgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatatacaccctccc 228  Q
    ||||||||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  29303005 catgaaaagctagggtgcagtctgttattgttttggc-tttttgatgcaatttgctatatataccccatatgaaagaaagctttctatacacaccctccc 29303103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 2565317 - 2565566
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaat-tttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca-- 115  Q
    ||||||||||||||||||||| | ||||  ||||||||  | ||||||||||||||||||||||||  | ||||| |||||||||||||||||    |      
T  2565317 ggcccatgccggtagggggccttaaaaaagtttttattagtaggggtgtatatagtaagaattggtattttggggctttatatagtaaaatataccaaca 2565416  T
Q  116 -gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttc 213  Q
     |||||||| ||| |||  ||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||| |||||| ||||||   ||||    
T  2565417 ggcccgaaacattaaca--aaaagttgggctgcaatctgttattattttggcctttttgatgcaatttgttatatatacaccatataaaacaagtatttc 2565514  T
Q  214 tatatacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaa 264  Q
    ||||| |||||||||        |||||| ||||||||||||||||||||||    
T  2565515 tatattcaccctcccaacaaaaattggccctttgtttctaataatgtgccaa 2565566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 18781581 - 18781332
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaat-tttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca-- 115  Q
    ||||||||||||||||||||| | ||||  ||||||||  | ||||||||||||||||||||||||  | ||||| |||||||||||||||||    |      
T  18781581 ggcccatgccggtagggggccttaaaaaagtttttattagtaggggtgtatatagtaagaattggtattttggggctttatatagtaaaatataccaaca 18781482  T
Q  116 -gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttc 213  Q
     |||||||| ||| |||  ||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||| |||||| ||||||   ||||    
T  18781481 ggcccgaaacattaaca--aaaagttgggctgcaatctgttattattttggcctttttgatgcaatttgttatatatacaccatataaaacaagtatttc 18781384  T
Q  214 tatatacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaa 264  Q
    ||||| |||||||||        |||||| ||||||||||||||||||||||    
T  18781383 tatattcaccctcccaaaaaaaattggccctttgtttctaataatgtgccaa 18781332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 19674499 - 19674565
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaatttttt-attgttgggggtgtatatagtaagaattggtt 85  Q
    ||||||||||||||||||| || |||| |||||| |||| || |||||||||||||||| |||||||    
T  19674499 ggcccatgccggtaggggggccctaaattttttttattggtgagggtgtatatagtaagtattggtt 19674565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 9057207 - 9057304
Alignment:
Q  131 tgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatatacaccctccc 228  Q
    ||||| |||| |||| ||||||||| |||| ||||| |||||   ||||| ||||||||||| || | | | |||||| |||||||||||||||||||    
T  9057207 tgaaaggctgtgctgaagtctgttaatgttatggcccttttgtctcaatttgctatatatacacccttttatacaaagatttctatatacaccctccc 9057304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 6927941 - 6927693
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcagcc 118  Q
    ||||||||||||||||||||||| |   |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  6927941 ggcccatgccggtagggggccctaatttttttttattggtgggggtgtatatagtaagaattggttttatgggggtttatatagtaaaatattggcagcc 6927842  T
Q  119 cgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  6927841 cgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctatat 6927742  T
Q  219 acaccctcccnnnnnnnttggccatttgtttctaataatgtgccaagaa 267  Q
    ||||||| ||       |||||| |||||||||||||||||||||||||    
T  6927741 acacccttccaaaaaaattggccctttgtttctaataatgtgccaagaa 6927693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 28508958 - 28509209
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaatttttt-attgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag- 116  Q
    ||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||     
T  28508958 ggcccatgccggtagggggccctaaaattttttttattggtgggggtgtatatagtaagaattggttttatgggggtttatataggaaaatattggcagg 28509057  T
Q  117 cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  28509058 cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctat 28509157  T
Q  217 atacaccctcccnnnnnnnttggccatttgtttctaataatgtgccaagaac 268  Q
    ||||||||||||       |||||| ||||||||||||||||||||||||||    
T  28509158 atacaccctcccaaaaaaattggccctttgtttctaataatgtgccaagaac 28509209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 11995117 - 11994867
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca--- 115  Q
    ||||||||||||||||||||||| ||||  ||  |||| ||||||||||||||||||||||||||| | ||||| ||||| |||||||||||  | |       
T  11995117 ggcccatgccggtagggggccctaaaaaaatt--attggtgggggtgtatatagtaagaattggttttttgggggtttatttagtaaaatatactaacag 11995020  T
Q  116 gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttct 214  Q
    |||||||| ||||| ||||||| |||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  11995019 gcccgaaacattgatatgaaaatctgggctagagtctgttattgttttggcctttttgatgcaatttgctatatataccccatataaaacaaagccttct 11994920  T
Q  215 atatacaccc-tcccnnnnnnnttggccatttgtttctaataatgtgccaaga 266  Q
    |||||||||| |||        |||||||||| ||||||||||||||||||||    
T  11994919 atatacacccttccaaaaaaaattggccatttctttctaataatgtgccaaga 11994867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 2807969 - 2807883
Alignment:
Q  138 ctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatatacaccc 224  Q
    |||||||| |||||||||||||||||||| |||||||||||||  ||||||||||||||||| |||||||||||||||| |||||||    
T  2807969 ctgggctgaagtctgttattgttttggcccttttgatgcaattttctatatataccccatataaaacaaagctttctatttacaccc 2807883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 24682371 - 24682538
Alignment:
Q  60 gggggtgtatatagtaagaattggttatatg-gggtttatatagtaaaatattgt--cag-cccgaaa-attgacatgaaaagctgggctgcagtctgtt 154  Q
    |||||||||||| | ||||||||||| |  | ||||||||||||||||||||     ||| ||||||| ||||||| |||| ||||||||| |||||| |    
T  24682371 gggggtgtatatggcaagaattggtttttggtgggtttatatagtaaaatataccaacagacccgaaacattgacaagaaaggctgggctgaagtctgat 24682470  T
Q  155 attgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatatacac 222  Q
    |||||||||||| ||| |||||||||  ||||||||||||||| | |||| |||||||||||||||||    
T  24682471 attgttttggccctttcgatgcaattttctatatataccccatgtaaaacgaagctttctatatacac 24682538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 2879482 - 2879367
Alignment:
Q  150 ctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatatacaccctccc-nnnnnnnttggccatttgtt 248  Q
    |||||||| |||||||||||||||||||||| | ||||||||| |||||| ||||||   ||||||||| |||||||||        |||||| ||||||    
T  2879482 ctgttattattttggcctttttgatgcaatttgttatatatacaccatataaaacaagtatttctatattcaccctcccaaaaaaaattggccctttgtt 2879383  T
Q  249 tctaataatgtgccaa 264  Q
    ||||||||||||||||    
T  2879382 tctaataatgtgccaa 2879367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 38490744 - 38490994
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaatttttt-attgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag- 116  Q
    ||||||||||||||||||||||| ||  |||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||     
T  38490744 ggcccatgccggtagggggccctaaatttttttttattggtgggggtgtatatagtaagaattggttttatgggggtttatatagtaaaatattggcagg 38490843  T
Q  117 cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctat 216  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  38490844 cccgaaaattgacatgaaaagctgggctgcaatctgttattgtttaggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctat 38490943  T
Q  217 atacaccctcccnnnnnnnttggccatttgtttctaataatgtgccaagaa 267  Q
    ||||||||||||       |||||| |||||||||||||||||||||||||    
T  38490944 atacaccctcccaaaaaaattggccctttgtttctaataatgtgccaagaa 38490994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 7850019 - 7850261
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag-c 117  Q
    |||||||||||||||||| |||| ||||   |||||||   ||||||||||||||||| ||||||| | ||||| ||||||||||||||||||| | | |    
T  7850019 ggcccatgccggtagggg-ccctaaaaaaaatttattggccggggtgtatatagtaagcattggttttctgggggtttatatagtaaaatattggccggc 7850117  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    ||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7850118 ccgaaaattgacat-------tgggttgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccatatgaaacaaagctttctata 7850210  T
Q  218 tacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaagaa 267  Q
    |||||||||||        |||||| ||||||||||||||| |||||||||    
T  7850211 tacaccctcccaaaaaaaattggccctttgtttctaataatatgccaagaa 7850261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 14652140 - 14651894
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca--- 115  Q
    |||||||||||||||||| |||| ||||    |||||| ||||| ||||||||||||||||||||| | ||||| |||||||||||||||||  | |       
T  14652140 ggcccatgccggtagggg-ccctaaaaaaaaattattggtggggatgtatatagtaagaattggttttttgggggtttatatagtaaaatatactaacag 14652042  T
Q  116 gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttct 214  Q
    |||||||| ||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  14652041 gcccgaaacattgatatgaaaatctgagctggagtctgttattgttttggcctttttgatgcaatttgctatatataccccatat-aaacaaagccttct 14651943  T
Q  215 atatacaccc-tcccnnnnnnnttggccatttgtttctaataatgtgcc 262  Q
    |||||||||| |||        |||||||||||||||||||||||||||    
T  14651942 atatacacccttccgaaaaaaattggccatttgtttctaataatgtgcc 14651894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 41458426 - 41458512
Alignment:
Q  139 tgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatatacaccct 225  Q
    ||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||| || ||||||||    
T  41458426 tgggctgaagtctgttattgttttggcccttttgatgtaatttgctatatataccccatataaaacaaagctttccatttacaccct 41458512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 48238158 - 48238404
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatat-ggggtttatatagtaaaatattgtcag-c 117  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||| |    
T  48238158 ggcccatgccggtagggggccct-aaaattttttatttctgggggtgtatatagtaagaattggttttctaggggtttatatagtaaaatattggcaggc 48238256  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||    
T  48238257 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttctgatgcaatttgctatatataccccatatgaaacaaatctttctata 48238356  T
Q  218 tacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaa 264  Q
    |||||||||||        |||||| ||||||||||||||||||||||    
T  48238357 tacaccctcccaaaaacaattggccctttgtttctaataatgtgccaa 48238404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 8069276 - 8069528
Alignment:
Q  20 ggcccatgccggtaggggg-cccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag- 116  Q
    ||||||||||||||||||| |||| ||||| |||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||     
T  8069276 ggcccatgccggtaggggggccctaaaaatattttattggtgagggtgtatatagtaagaattggttttatgggggtttatatagtaaaatattggcagg 8069375  T
Q  117 cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctat 216  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  8069376 cccgaaaattgacatgaaaagctgggctgcagtctgttatttgtttggcctttttgatgcaatttgctatatataccccatatgaaaaaaagctttctat 8069475  T
Q  217 atacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaagaac 268  Q
    ||||||||||||        |||||| ||||||||||||||||||||||||||    
T  8069476 atacaccctcccaaaaaaaattggccctttgtttctaataatgtgccaagaac 8069528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 6189802 - 6189552
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgg-ggtttatatagtaaaatattgtcag-c 117  Q
    |||||||||| |||||||||||| ||  |||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||| |    
T  6189802 ggcccatgccagtagggggccctaaattttttttatcggtgggggtgtatatagtaagaattggttttatggtggtttatatagtcaaatattggcaggc 6189703  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  6189702 ccgaaaatttatatgaaaagatgggctgcagtctgttattgttttggcctttttgatgcaatttactatatataccccatatgaaataaagctttctata 6189603  T
Q  218 tacaccctcccnnnnnnnttggccatttgtttctaataatgtgccaagaac 268  Q
    |||||||||||       |||||| ||| ||||||||||||||||||||||    
T  6189602 tacaccctcccaaaaaaattggccctttctttctaataatgtgccaagaac 6189552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 48636402 - 48636649
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag-c 117  Q
    ||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||| |    
T  48636402 ggcccatgccggtagggggccctaaaaaaattttattgttcggggtgtatatagtaagaattggttttctgggggtttatatagtaaaatattggcaggc 48636501  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    |||||||||| |||||||||||||| ||||||| ||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48636502 ccgaaaattg-catgaaaagctgggttgcagtccgtta--gttttggcctttttgatgcaatttgctatatataccccatatgaaacaaagctttctata 48636598  T
Q  218 tacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaagaa 267  Q
    |||||||||||        |||||| |||||||||||||||||||||||||    
T  48636599 tacaccctcccaaaaaaaattggccctttgtttctaataatgtgccaagaa 48636649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 266
Target Start/End: Complemental strand, 19312343 - 19312095
Alignment:
Q  23 ccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca---gcc 118  Q
    |||||||||||||||||||| ||||   || |||| ||||||||||||||||| || |||||| | ||||| |||||||||||||||||  | |   |||    
T  19312343 ccatgccggtagggggccctaaaaaaaatt-attggtgggggtgtatatagtacgacttggttttttgggggtttatatagtaaaatatactaacaggcc 19312245  T
Q  119 cgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    ||||| ||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  19312244 cgaaacattgatatgaaaatctgggctggagtctgttattgtttcggcctttttgatgcaatttgctatatataccccatataaaacaaagccttctata 19312145  T
Q  218 tacaccc-tcccnnnnnnnttggccatttgtttctaataatgtgccaaga 266  Q
    ||||||| |||        |||||||||||||||||||||||||||||||    
T  19312144 tacacccttccaaaaaaaattggccatttgtttctaataatgtgccaaga 19312095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 135502 - 135616
Alignment:
Q  116 gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatat-gaaacaaagctttc 213  Q
    |||||||| |||||||| | || |||||| | ||||||||||||||||| ||  |||||||||||| |  ||||||| |||||||  ||| ||| |||||    
T  135502 gcccgaaacattgacattataaactgggccgaagtctgttattgttttgtcccgtttgatgcaatttgtcatatatagcccatataaaaaaaaatctttc 135601  T
Q  214 tatatacaccctccc 228  Q
    ||| |||||||||||    
T  135602 tatttacaccctccc 135616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 33516998 - 33516788
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatat-ggggtttatatagtaaaatattgtcag-c 117  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |    
T  33516998 ggcccatgccggtagggggccctaaattttttttattggtgggggtgtatatagtaagaattggttttataggggtttatatagtaaaatattggcaggc 33516899  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  33516898 ccgaaatttgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctata 33516799  T
Q  218 tacaccctccc 228  Q
    |||||||||||    
T  33516798 tacaccctccc 33516788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 14677428 - 14677678
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca--- 115  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||  | |       
T  14677428 ggcccatgccggtagggggcc-ttaaaaatttttattggtgggggtgtatatagtaagaattggttttttgggggtttatatagtaaaatatactaacag 14677526  T
Q  116 gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttct 214  Q
    |||||||| ||||| ||||||| |||||||| ||||||||||| |||||| |||||| |||||||| |||||||||||||||||| ||| ||||| ||||    
T  14677527 gcccgaaacattgatatgaaaatctgggctggagtctgttattattttggtcttttttatgcaatttgctatatataccccatataaaaaaaagccttct 14677626  T
Q  215 atatacaccctcccnnnnnnnttggccatttgtttctaataatgtgccaaga 266  Q
    | ||||||||| ||       |||||||||||||||||||||||||||||||    
T  14677627 acatacacccttccaaaaaaattggccatttgtttctaataatgtgccaaga 14677678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 12269223 - 12269313
Alignment:
Q  138 ctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatatacaccctccc 228  Q
    ||||||||  ||||||||||| ||||||| ||||||| || || ||||||||  |||||||| |||||||||||||||| |||||||||||    
T  12269223 ctgggctgaggtctgttattgctttggcccttttgatacattttgctatataccccccatataaaacaaagctttctatttacaccctccc 12269313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 11681142 - 11681059
Alignment:
Q  147 agtctgttattgtttt-ggcctttttgatgcaattggctatatataccc-catatgaaacaaagctttctatatacaccctccc 228  Q
    ||||||||| |||||| |||| |||||  |||||| ||||||| ||||| ||||| | |||||| |||||||||||||||||||    
T  11681142 agtctgttaatgtttttggcccttttggcgcaatttgctatatgtaccctcatataacacaaagatttctatatacaccctccc 11681059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 28946219 - 28945966
Alignment:
Q  19 aggcccatgccggtagggggcccttaaaa-ttttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag 116  Q
    |||||||||||||||||||| |||||||| |||||||||| || |||||| ||||||||| ||||||| ||||||| ||||||||||||||||||| |||    
T  28946219 aggcccatgccggtaggggggccttaaaaattttttattggtgagggtgtgtatagtaagtattggttttatgggggtttatatagtaaaatattggcag 28946120  T
Q  117 -cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttcta 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  28946119 gcccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccgcatatgaaaaaaagctttcta 28946020  T
Q  216 tatacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaagaac 268  Q
    |||||||||||||        |||||| ||||||||||||||||||||||||||    
T  28946019 tatacaccctcccaaaaaaaattggccctttgtttctaataatgtgccaagaac 28945966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 42721937 - 42722184
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag-c 117  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||| |    
T  42721937 ggcccatgccggtagggggccctaaaaaatttttattgttcggggtgtatatagtaagaattggttttctgggggtttatatagtaaaatattggcaggc 42722036  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    |||||||||| |||||||||||||| ||||||| ||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42722037 ccgaaaattg-catgaaaagctgggttgcagtccgtta--gttttggcctttttgatgcaatttgctatatataccccatatgaaacaaagctttctata 42722133  T
Q  218 tacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaagaa 267  Q
    |||||||||||        |||||| |||||||||||||||||||||||||    
T  42722134 tacaccctcccaaaaaaaattggccctttgtttctaataatgtgccaagaa 42722184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 36296400 - 36296649
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag-c 117  Q
    ||||||||||||||||||||||| ||||   ||||||| | ||||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||| |    
T  36296400 ggcccatgccggtagggggccctaaaaaaaatttattggtcggggtgtatatagtaagaattggttttctgggggtttatatagtaaaatattggcaggc 36296499  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  36296500 ccgaaaattg-catgaaaagctgggttgcagtccgttattgttttggcctttttgatgcaatttgctatatataccccatatgaaacaaatctttctata 36296598  T
Q  218 tacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaagaa 267  Q
    |||||||||||        |||||| |||||||||||||||||||||||||    
T  36296599 tacaccctcccaaaaaaaattggccctttgtttctaataatgtgccaagaa 36296649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 26221383 - 26221595
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaat-tttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca-- 115  Q
    |||||||| |||||||||||| | ||||  ||||||||  | ||||||||||||||||||||||||  | ||||| |||||||||||||||||    |      
T  26221383 ggcccatgtcggtagggggccttaaaaaagtttttattagtaggggtgtatatagtaagaattggtattttggggctttatatagtaaaatataccaaca 26221482  T
Q  116 -gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttc 213  Q
     |||||||| ||| |||  ||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||| |||||| ||||||   ||||    
T  26221483 ggcccgaaacattaaca--aaaagttgggctgcaatctgttattattttggcctttttgatgcaatttgttatatatacaccatataaaacaagtatttc 26221580  T
Q  214 tatatacaccctccc 228  Q
    ||||| |||||||||    
T  26221581 tatattcaccctccc 26221595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 28143854 - 28143602
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaatttttt-attgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag- 116  Q
    ||||||||||||||||||| |||||||||||||| |||| || |||||| ||||||||| ||||||| ||||||| ||||||||||||||||||| |||     
T  28143854 ggcccatgccggtaggggggccttaaaatttttttattggtgagggtgtgtatagtaagtattggttttatgggggtttatatagtaaaatattggcagg 28143755  T
Q  117 cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||    
T  28143754 cccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccgcatatgaaaaaaagctttctat 28143655  T
Q  217 atacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaagaac 268  Q
    ||||||||||||        |||||| ||||||||||||||||||||||||||    
T  28143654 atacaccctcccaaaaaaaattggccctttgtttctaataatgtgccaagaac 28143602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 51337349 - 51337598
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatat-ggggtttatatagtaaaatattgtcag-c 117  Q
    ||||||||||||||||||||||| ||||   ||||||| | ||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||| |    
T  51337349 ggcccatgccggtagggggccctaaaaaaaatttattggtcggggtgtatatagtaagaattggttttcttggggtttatatagtaaaatattggcagcc 51337448  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||    
T  51337449 ccgaaaattg-catgaaaagctgggttgcagtccgttattgttttggcctttttgatgcaatttgctatatatactccatatgaaacaaatatttctata 51337547  T
Q  218 tacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaagaa 267  Q
    |||||||||||        |||||| |||||||||||||||||||||||||    
T  51337548 tacaccctcccaaaaaaaattggccctttgtttctaataatgtgccaagaa 51337598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 14192722 - 14192473
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaat-tttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca-- 115  Q
    ||||||||||||||||||||| | ||||  ||||||||  | ||||||||||||||||||||||||  | ||||| |||||||||||||||||    |      
T  14192722 ggcccatgccggtagggggccttaaaaaagtttttattagtaggggtgtatatagtaagaattggtattttggggctttatatagtaaaatataccaaca 14192623  T
Q  116 -gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttc 213  Q
     |||||||| ||| |||  ||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||||| |||||| ||||||   ||||    
T  14192622 ggcccgaaacattaaca--aaaagttgggctgcaatctgttattattttggcctttttgatgcaattcgttatatatacaccatataaaacaagtatttc 14192525  T
Q  214 tatatacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaa 264  Q
    ||||| |||||||||        |||||| ||||||||||||||||||||||    
T  14192524 tatattcaccctcccaaaaaaaattggccctttgtttctaataatgtgccaa 14192473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 20152638 - 20152551
Alignment:
Q  142 gctgcagtctgttattgttttggcctttttgatgcaattggctatatatac-cccatatgaaacaaagctttctatatacaccctccc 228  Q
    |||| ||||| ||| | |||||||||||||| ||| ||| ||||||||||| ||||||| ||||| || |||||||| ||||||||||    
T  20152638 gctgaagtctattaatcttttggcctttttggtgcgatttgctatatatacacccatattaaacatagatttctataaacaccctccc 20152551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 31885353 - 31885104
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgg-ggtttatatagtaaaatattgtcag-c 117  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||| |    
T  31885353 ggcccatgccggtagggggccct-aaatttttttattggtgggggtgtatatagtaagaattggttttatggtggtttatatagtcaaatattggcaggc 31885255  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  31885254 ccgaaaattgatatgaaaagctgggctgcagtctgttattgttctggcctttttgatgcaatttgctatatataccccatatgaaaaaaagctttctata 31885155  T
Q  218 tacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaagaa 267  Q
    |||||||||||        |||||| ||| |||||||||||||||||||||    
T  31885154 tacaccctcccaaaaaaaattggccctttctttctaataatgtgccaagaa 31885104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 23045280 - 23045071
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaattttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtcag-c 117  Q
    ||||||||||||||||||||||| ||  |||||||||| | ||||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||| |    
T  23045280 ggcccatgccggtagggggccctaaattttttttattggtcggggtgtatatagtaagaattggttttctgggggtttatatagtaaaatattggcaggc 23045181  T
Q  118 ccgaaaattgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctata 217  Q
    |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23045180 ccgaaaattg-catgaaaagctgggttgcagtctgttattattttggcctttttgatgcaatttgctatatataccccatatgaaacaaagctttctata 23045082  T
Q  218 tacaccctccc 228  Q
    |||||||||||    
T  23045081 tacaccctccc 23045071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 6025164 - 6024915
Alignment:
Q  20 ggcccatgccggtagggggcccttaaaat-tttttattgttgggggtgtatatagtaagaattggttatatgggg-tttatatagtaaaatattgtca-- 115  Q
    ||||||||||||||||||||| | ||||  ||||||||  | ||||||||||||||||||||||||  | ||||| |||||||||||||||||    |      
T  6025164 ggcccatgccggtagggggccttaaaaaagtttttattagtaggggtgtatatagtaagaattggtattttggggctttatatagtaaaatataccaaca 6025065  T
Q  116 -gcccgaaa-attgacatgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttc 213  Q
     |||||||| ||| |||  ||||| ||||||||| | ||||||| |||||||||||||||||||||| | ||||||||| |||||| ||||||   ||||    
T  6025064 ggcccgaaacattaaca--aaaagttgggctgcaatatgttattattttggcctttttgatgcaatttgttatatatacaccatataaaacaagtatttc 6024967  T
Q  214 tatatacaccctccc-nnnnnnnttggccatttgtttctaataatgtgccaa 264  Q
    ||||| |||||||||        |||||| ||||||||||||||||||||||    
T  6024966 tatattcaccctcccaaaaaaaattggccctttgtttctaataatgtgccaa 6024915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 6583808 - 6583886
Alignment:
Q  150 ctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatatacaccctccc 228  Q
    ||||||||||||||| | ||| ||||||||| | |||||||||||||||| ||||||| |||||||| |||||||||||    
T  6583808 ctgttattgttttggtcctttcgatgcaattcgttatatataccccatataaaacaaacctttctatttacaccctccc 6583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 3672 - 3490
Alignment:
Q  48 ttttttattgttgggggtgtatatagtaagaattggttatatggg-gtttatatagtaaaatattgtcag-cccgaaaattgacatgaaaagctgggctg 145  Q
    |||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  3672 ttttttattggtgggggtgtatatagtaagaattggttttctgggcgtttatatagtaaaatattggcaggcccgaaaattgacatgataagctgggctg 3573  T
Q  146 cagtctgttattgttttggcctttttgatgcaattggctatatataccccatatgaaacaaagctttctatatacaccctccc 228  Q
     |||||||||||||||| |||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  3572 aagtctgttattgttttagcctttttgatgcaatttactatatatatcccatatgaaaaaaagctttctatatacaccctccc 3490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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