View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_74 (Length: 302)
Name: NF2158_low_74
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_74 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 10968562 - 10968294
Alignment:
| Q |
17 |
caatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaa |
116 |
Q |
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| T |
10968562 |
caatgtgtcacgaatccaccaatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttgccaccattcccttttgctttgtcctctccaaaa |
10968463 |
T |
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| Q |
117 |
acccttctgggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgc |
216 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968462 |
acccttcaggaagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgc |
10968363 |
T |
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| Q |
217 |
tatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacgctttgact |
285 |
Q |
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| T |
10968362 |
tatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacgctttgact |
10968294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 10982512 - 10982246
Alignment:
| Q |
17 |
caatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaa |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |
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| T |
10982512 |
caatgtgtcacgaatccaccgatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttaccaccattcccctttcttttgtcctctccaaaa |
10982413 |
T |
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| Q |
117 |
acccttctgggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgc |
216 |
Q |
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| T |
10982412 |
acccttcagggagcaactcgtccaaactttgctcctctaaatccaactcgctcctaataacccacaagaatctttgctcacttttttccaatccaagtgc |
10982313 |
T |
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| Q |
217 |
tatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacgctttga |
283 |
Q |
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| T |
10982312 |
tatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacgctttga |
10982246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 53 - 285
Target Start/End: Complemental strand, 11019087 - 11018855
Alignment:
| Q |
53 |
aatatcgcaccttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaaacccttctgggagcaactcgtccaaactttgctcct |
152 |
Q |
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| T |
11019087 |
aatatcgcaacttgtggggcccaatttctcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaataactcgtccaaactcaacttgt |
11018988 |
T |
|
| Q |
153 |
ctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccat |
252 |
Q |
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| T |
11018987 |
ctgagtctggttcactcctaacaacccacaagaatctttgctcacttttctccaatccaatagctatctcattcaattgagccctagaaaatcttcccat |
11018888 |
T |
|
| Q |
253 |
gcttccaaaacttaacaacacgacgctttgact |
285 |
Q |
| |
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||||||||| || |||||||||||||||||||| |
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| T |
11018887 |
gcttccaaagctcaacaacacgacgctttgact |
11018855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 11002736 - 11002474
Alignment:
| Q |
23 |
gtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaaaccctt |
122 |
Q |
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|||||||||||||||| || || || | ||||| ||| ||||||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||| |
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| T |
11002736 |
gtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcccttttccttcgtcctctccaaaaaccctt |
11002637 |
T |
|
| Q |
123 |
ctgggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctc |
222 |
Q |
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|||| | ||| || |||||||| | ||||| |||| |||| ||||| |||| ||| |||||||||||||||||| | |||||||||| |||||||| |
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| T |
11002636 |
ctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcacttttctccaatccaatagctatctc |
11002537 |
T |
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| Q |
223 |
attcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacgctttgact |
285 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |
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| T |
11002536 |
attcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgacgctttgact |
11002474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 61 - 284
Target Start/End: Complemental strand, 11079839 - 11079616
Alignment:
| Q |
61 |
accttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaaacccttctgggagcaactcgtccaaactttgctcctctaagtcc |
160 |
Q |
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||||||||||||||| ||||| || ||||||||||| | ||||||||||||||||||||||||||| | |||||| ||||||||| | ||||| | ||| |
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| T |
11079839 |
accttgtggtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactcc |
11079740 |
T |
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| Q |
161 |
aactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaa |
260 |
Q |
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| T |
11079739 |
atatcgctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctgattaatttgagccttagaaaatctccctaagcttccaa |
11079640 |
T |
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| Q |
261 |
aacttaacaacacgacgctttgac |
284 |
Q |
| |
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| || ||||| ||||||||||||| |
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| T |
11079639 |
agctcaacaaaacgacgctttgac |
11079616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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