View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_79 (Length: 297)

Name: NF2158_low_79
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_79
NF2158_low_79
[»] chr7 (8 HSPs)
chr7 (1-279)||(36363175-36363454)
chr7 (7-210)||(10704637-10704836)
chr7 (7-243)||(23698470-23698706)
chr7 (161-227)||(10070476-10070542)
chr7 (146-227)||(5644008-5644089)
chr7 (146-227)||(5644336-5644417)
chr7 (146-227)||(5649860-5649941)
chr7 (146-227)||(5650188-5650269)
[»] chr6 (4 HSPs)
chr6 (7-279)||(5041173-5041446)
chr6 (142-227)||(2298110-2298195)
chr6 (7-53)||(13649446-13649492)
chr6 (7-39)||(3550742-3550774)
[»] chr2 (6 HSPs)
chr2 (7-243)||(17568803-17569039)
chr2 (148-227)||(37444898-37444977)
chr2 (7-226)||(16241533-16241753)
chr2 (6-41)||(37532725-37532760)
chr2 (29-143)||(43182607-43182721)
chr2 (7-39)||(27951868-27951900)
[»] chr4 (4 HSPs)
chr4 (7-225)||(14137332-14137550)
chr4 (160-215)||(7098298-7098353)
chr4 (154-234)||(2187241-2187321)
chr4 (7-52)||(43128017-43128062)
[»] chr8 (6 HSPs)
chr8 (7-184)||(43845375-43845552)
chr8 (7-184)||(38896031-38896207)
chr8 (24-225)||(9616288-9616490)
chr8 (8-39)||(42648887-42648918)
chr8 (68-105)||(28493303-28493340)
chr8 (7-39)||(37322219-37322251)
[»] chr5 (4 HSPs)
chr5 (7-225)||(10685118-10685337)
chr5 (116-225)||(36500374-36500483)
chr5 (154-227)||(22626115-22626188)
chr5 (7-40)||(39073451-39073484)
[»] chr1 (1 HSPs)
chr1 (7-242)||(48129794-48130023)
[»] chr3 (2 HSPs)
chr3 (7-225)||(26083984-26084202)
chr3 (7-39)||(3168568-3168600)
[»] scaffold0036 (1 HSPs)
scaffold0036 (7-39)||(45258-45290)
[»] scaffold0024 (1 HSPs)
scaffold0024 (7-39)||(87651-87683)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 36363175 - 36363454
Alignment:
Q  1 attaattttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattc 100  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||| || |||||||||||||||||||||||||||||||    
T  36363175 attagttttcagccatcacaaagaataatattttactttttcaagtaagtgatgactacagcatttctgatttttaaacaacctattatttcgctcattc 36363274  T
Q  101 cacaagatccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaa 200  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| |||    
T  36363275 cacaagatccaagaacacataagccatatgagctgtagaaaattttgccgcgctttcggaccacctgtgtaataaataaattggtagaagtgatctaaaa 36363374  T
Q  201 taacctgagtgtccacaccatcaaaactggtccatgctcgcac-agcgactaaagggaggtgaaggttgagcacgataga 279  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  36363375 taacctgagtgtccacaccatcaaaactggtccatgctcgcacaagcgaccaaagggaggttaaggttgagcacgataga 36363454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 10704836 - 10704637
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaag 106  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||||||||   ||||||| |||||||||||||  ||||||||  ||||||||||||    
T  10704836 tttcagccaccacaaagaataattttttactttttcaagtagttgataactattgcattcctgatttttaaacaactgattatttctttcattccacaag 10704737  T
Q  107 atccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacct 206  Q
    ||| |||| |||| |||||| ||||| |  |||||||| |||    ||||| | ||||| |||||||||||||| |  |||| ||||||  |||||||||    
T  10704736 atctaagagcacaaaagtcaaatgagataaagaaaattacgc----ctttcaggccaccagtgtaataaataaactaattaaggtgatcctaaataacct 10704641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 23698706 - 23698470
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaag 106  Q
    ||||| |||||||||||||||  | ||||||||||| |||||| |||||  | | | ||| | ||||||||| |||||| ||||  | ||||||||||||    
T  23698706 tttcaaccaccacaaagaatataactttactttttctagtaaccgataaagagagctttcttgatttttaaataacctactattgtgttcattccacaag 23698607  T
Q  107 atccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacct 206  Q
    | ||||  ||| | ||| || | ||| ||||| |||  || |||||||||  |||||  ||||||||||||||||||| | || ||||||||||||||||    
T  23698606 acccaaacacatagaagccaaacgagctgtaggaaagatcaccgcgcttttagaccatatgtgtaataaataaattgggtgaaatgatctgaaataacct 23698507  T
Q  207 gagtgtccacaccatcaaaactggtccatgctcgcac 243  Q
    |||| |||   ||||||||||   |||||||||||||    
T  23698506 gagtatccgtcccatcaaaaccaatccatgctcgcac 23698470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 10070476 - 10070542
Alignment:
Q  161 ccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatcaaaac 227  Q
    ||||||||||||||| |||||||| | |||||||| |||||||||||||| || || ||||||||||    
T  10070476 ccacctgtgtaataagtaaattgggtgaagtgatcagaaataacctgagtatcgaccccatcaaaac 10070542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 5644008 - 5644089
Alignment:
Q  146 cgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatcaaaac 227  Q
    ||||||| |||| ||||||||||||||||||| || || | ||| |||| |||||| |||||||  |||| |||||||||||    
T  5644008 cgccgcgatttcagaccacctgtgtaataaatgaactgttgaaaatgatatgaaatcacctgagaatccataccatcaaaac 5644089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 5644336 - 5644417
Alignment:
Q  146 cgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatcaaaac 227  Q
    ||||||| |||| ||||||||||||||||||| || || | ||| |||||| |||| |||||||  |||| |||||||||||    
T  5644336 cgccgcgatttcagaccacctgtgtaataaatgaactgttgaaaatgatctaaaatcacctgagaatccataccatcaaaac 5644417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 5649860 - 5649941
Alignment:
Q  146 cgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatcaaaac 227  Q
    ||||||| |||| ||||||||||||||||||| || || | ||| |||| |||||| |||||||  |||| |||||||||||    
T  5649860 cgccgcgatttcagaccacctgtgtaataaatgaactgttgaaaatgatatgaaatcacctgagaatccataccatcaaaac 5649941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 5650188 - 5650269
Alignment:
Q  146 cgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatcaaaac 227  Q
    ||||||| |||| ||||||||||||||||||| || || | ||| |||||| |||| |||||||  |||| |||||||||||    
T  5650188 cgccgcgatttcagaccacctgtgtaataaatgaactgttgaaaatgatctaaaatcacctgagaatccataccatcaaaac 5650269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 5041173 - 5041446
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaag 106  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||| |||||||||||| |||||||||| |||||||||| |     
T  5041173 tttcagccaccacaaagaataatattttactttttcaagtaattgataactagtgcattcctgatttttaaacaatctattatttctctcattccacgaa 5041272  T
Q  107 atccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacct 206  Q
    ||||| ||||||| ||| ||||| || | ||||||||||||||||| |||  ||||||||||||||||||||||||| |  |||||||| ||||||||||    
T  5041273 atccatgaacacaaaagccatataagctctagaaaatttcgccgcggttttagaccacctgtgtaataaataaattgatagaagtgatccgaaataacct 5041372  T
Q  207 gagtgtccacaccatcaaaactggtccatgctcgc-acagcgactaaagggaggtgaaggttgagcacgataga 279  Q
    |||||| |||||||||||||  | ||||||||||| ||| |||| |||||||||| || | |||||||||||||    
T  5041373 gagtgtacacaccatcaaaatcgatccatgctcgcaacaacgaccaaagggaggtaaacgctgagcacgataga 5041446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 2298110 - 2298195
Alignment:
Q  142 atttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatcaaaac 227  Q
    |||||| |||||||||||||||||| || |||||||||||||||  || |||||   ||||||||| ||||| |||||| ||||||    
T  2298110 atttcgtcgcgctttcggaccacctatgcaataaataaattggtagaaatgatcatgaataacctgcgtgtcgacaccaccaaaac 2298195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 13649492 - 13649446
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgat 53  Q
    ||||| ||||||||||||||||||||||||||| || |||| |||||    
T  13649492 tttcaaccaccacaaagaataatattttactttgtctagtagctgat 13649446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 3550742 - 3550774
Alignment:
Q  7 tttcagccaccacaaagaataatattttacttt 39  Q
    ||||| |||||||||||||||||||||||||||    
T  3550742 tttcaaccaccacaaagaataatattttacttt 3550774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 17569039 - 17568803
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaag 106  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||   ||||||| |||||||||||||| | ||| |   ||||||||| ||    
T  17569039 tttcaaccaccacaaagaataatattttactttttcaagtagctgataactattgcattcctgatttttaaacaaccgactatatttttcattccacgag 17568940  T
Q  107 atccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacct 206  Q
    ||||| || |||| |||||||||||| ||||||||||| ||||||||||||   |||||||| ||||||||||| |  || | ||||||   ||||||||    
T  17568939 atccaggagcacaaaagtcatatgagatgtagaaaattacgccgcgctttcatgccacctgtataataaataaactaattgaggtgatcctgaataacct 17568840  T
Q  207 gagtgtccacaccatcaaaactggtccatgctcgcac 243  Q
    ||||||| ||||||||||| | | |||| ||||||||    
T  17568839 gagtgtcgacaccatcaaacccgatccacgctcgcac 17568803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 37444898 - 37444977
Alignment:
Q  148 ccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatcaaaac 227  Q
    |||||||||| |||||| |||||||||| |||||||| | || |||||  ||||||||||||| ||||| ||||||||||    
T  37444898 ccgcgctttcagaccacatgtgtaataagtaaattgggtgaaatgatcataaataacctgagtatccaccccatcaaaac 37444977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 16241533 - 16241753
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactg-ataactacaacattccttatttttaaacaacctattatttcgctcattccacaa 105  Q
    ||||||||||||||| |||||| | |||||||| ||  ||||||| | || || ||||||  | ||||||||| | || | |||| || |||||||||||    
T  16241533 tttcagccaccacaaggaataagactttactttctctggtaactggaaaaatagaacattaatgatttttaaaaagcccactattgcgttcattccacaa 16241632  T
Q  106 gatccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacc 205  Q
     |   ||  ||| | ||| || ||||| || | ||||| ||| |||||||||  | ||||||||||||| || | || | | || |||||||||||||||    
T  16241633 aacttaaacacaaagaagccaaatgagctgcataaaatatcgtcgcgctttcaaagcacctgtgtaatatatgatttaggtgaaatgatctgaaataacc 16241732  T
Q  206 tgagtgtccacaccatcaaaa 226  Q
    ||||||||||| |||||||||    
T  16241733 tgagtgtccactccatcaaaa 16241753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 37532760 - 37532725
Alignment:
Q  6 ttttcagccaccacaaagaataatattttacttttt 41  Q
    |||||| |||||||||||||||||||||||||||||    
T  37532760 ttttcaaccaccacaaagaataatattttacttttt 37532725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 43182721 - 43182607
Alignment:
Q  29 tattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaagatccaagaacacataagtcata 128  Q
    ||||| ||||||||||||| ||||||||||   ||||| |  |||||||||| || |||||||   ||||||| ||||||| ||||  ||| ||| ||||    
T  43182721 tatttcactttttcaagtagctgataactattgcattcgtggtttttaaacatccaattatttatttcattccgcaagatctaagaggacaaaagccata 43182622  T
Q  129 tgagttgtagaaaat 143  Q
     ||| ||||||||||    
T  43182621 agagatgtagaaaat 43182607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 27951900 - 27951868
Alignment:
Q  7 tttcagccaccacaaagaataatattttacttt 39  Q
    ||||||||||||||| |||||||||||||||||    
T  27951900 tttcagccaccacaacgaataatattttacttt 27951868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 14137332 - 14137550
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaag 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||| | |||||||||||||||||||||||  ||||||||||||    
T  14137332 tttcaaccaccacaaagaataatattttactttttcaagtaactgataactattgcattcatgatttttaaacaacctattatttctttcattccacaag 14137431  T
Q  107 atccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacct 206  Q
    |||||||| |||| ||| ||||||||  ||||||||||  | ||||||||  | |||||||||| |||||| || || |  ||||||||   |||| |||    
T  14137432 atccaagaccacaaaagccatatgagccgtagaaaattatgtcgcgcttttaggccacctgtgttataaatcaactgatagaagtgatcctgaatagcct 14137531  T
Q  207 gagtgtccacaccatcaaa 225  Q
    |||||||  ||||||||||    
T  14137532 gagtgtcggcaccatcaaa 14137550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 7098298 - 7098353
Alignment:
Q  160 accacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtcca 215  Q
    |||||||||||||||||||||||| |||||||||| ||||||| | ||| ||||||    
T  7098298 accacctgtgtaataaataaattgattaaagtgatatgaaatatcttgattgtcca 7098353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 2187241 - 2187321
Alignment:
Q  154 tttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatcaaaactggtcca 234  Q
    |||| ||||||||||||||||||| || || | ||| |||||| |||| |||||||  || ||||||||||||||| ||||    
T  2187241 tttcagaccacctgtgtaataaatgaactgttgaaaatgatctaaaatcacctgagaatcgacaccatcaaaactgatcca 2187321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 43128062 - 43128017
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactga 52  Q
    ||||| ||||||||||||||||||||||||||| || |||| ||||    
T  43128062 tttcaaccaccacaaagaataatattttactttgtctagtagctga 43128017  T

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Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 43845552 - 43845375
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaag 106  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||   ||||||| ||| |||||||| ||||||||||  ||||||||||||    
T  43845552 tttcagccaccacaaaaaatgatattttactttttcaagtaactgataactagtgcattcctgattattaaacaatctattatttctttcattccacaag 43845453  T
Q  107 atccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattgg 184  Q
    || ||||| |||| |||||||||||| || ||||||||  | ||||||||  |||||||| ||| |||||||||||||    
T  43845452 attcaagagcacaaaagtcatatgagctgaagaaaattctgtcgcgcttttagaccacctatgtcataaataaattgg 43845375  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 38896207 - 38896031
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaag 106  Q
    ||||| |||||||||||||| ||| ||||||||||||| |||||||||||||   ||||||| |||||||||||| |||||||||   ||||| ||||||    
T  38896207 tttcatccaccacaaagaatgatactttactttttcaaataactgataactagtgcattcctgatttttaaacaatctattatttttttcatt-cacaag 38896109  T
Q  107 atccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattgg 184  Q
    || ||||| |||| ||| ||||| || || |||| |||| ||||||||||   |||||||||| ||||||||||||||    
T  38896108 attcaagagcacaaaagccatataagctgaagaagattttgccgcgcttttaaaccacctgtgcaataaataaattgg 38896031  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 9616490 - 9616288
Alignment:
Q  24 aataatattttactttttcaagtaactga-taactacaacattccttatttttaaacaacctattatttcgctcattccacaagatccaagaacacataa 122  Q
    |||||| ||||||||||||||||| || | ||||||   || |||| |||| ||||| ||| ||| ||||  ||||||||||| | |||||| |||| ||    
T  9616490 aataattttttactttttcaagtagctaaataactattgcactcctgatttgtaaacgaccgattctttctttcattccacaatacccaagagcacaaaa 9616391  T
Q  123 gtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatc 222  Q
    | || ||||| || |||||||| || ||||||||| | ||||||||||||||||||||||| |||| ||||||   ||||||||||||||| ||||||||    
T  9616390 gccagatgagatgaagaaaattacgtcgcgctttcaggccacctgtgtaataaataaattgattaaggtgatcatgaataacctgagtgtcgacaccatc 9616291  T
Q  223 aaa 225  Q
    |||    
T  9616290 aaa 9616288  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 42648887 - 42648918
Alignment:
Q  8 ttcagccaccacaaagaataatattttacttt 39  Q
    ||||||||||||||||||||||||||||||||    
T  42648887 ttcagccaccacaaagaataatattttacttt 42648918  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 28493303 - 28493340
Alignment:
Q  68 ttatttttaaacaacctattatttcgctcattccacaa 105  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  28493303 ttattgttaaacaacctattattttgctcattccacaa 28493340  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 37322219 - 37322251
Alignment:
Q  7 tttcagccaccacaaagaataatattttacttt 39  Q
    ||||| |||||||||||||||||||||||||||    
T  37322219 tttcaaccaccacaaagaataatattttacttt 37322251  T

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Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 10685337 - 10685118
Alignment:
Q  7 tttcagccaccacaaagaataatattttacttttt-caagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaa 105  Q
    |||||||||||||||||||||||| || ||||||| | |||| ||||||||||  |||||||| |||||||||||||||||||||||  |||||||||||    
T  10685337 tttcagccaccacaaagaataatacttaacttttttctagtagctgataactagtacattcctgatttttaaacaacctattatttctttcattccacaa 10685238  T
Q  106 gatccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacc 205  Q
     |||||| | |||| ||||| |||||| ||  ||||||| || ||| ||||| |||||||| ||||||||||||| || |  ||||||||   |||| ||    
T  10685237 aatccaaaagcacaaaagtcgtatgagatgacgaaaattacgtcgcactttcagaccacctatgtaataaataaactgatggaagtgatcgtgaatagcc 10685138  T
Q  206 tgagtgtccacaccatcaaa 225  Q
    |||||||| |||||||||||    
T  10685137 tgagtgtcgacaccatcaaa 10685118  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 36500374 - 36500483
Alignment:
Q  116 cacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtcca 215  Q
    |||| ||| |||||||| || || ||||| || ||| ||||| |||||||||||||||||||||| || |  ||||||||   |||| |||||||||| |    
T  36500374 cacaaaagccatatgagatgaaggaaattacgtcgcactttcagaccacctgtgtaataaataaactgatggaagtgatcgtgaatagcctgagtgtcga 36500473  T
Q  216 caccatcaaa 225  Q
    ||||||||||    
T  36500474 caccatcaaa 36500483  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 22626188 - 22626115
Alignment:
Q  154 tttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacctgagtgtccacaccatcaaaac 227  Q
    |||| ||||||||||||||||||| || || | ||| ||||||||||| || ||||  ||||||||||||||||    
T  22626188 tttcagaccacctgtgtaataaatgaactgctgaaaatgatctgaaatcacttgagaatccacaccatcaaaac 22626115  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 39073451 - 39073484
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttt 40  Q
    |||||||||||||||||||||||||| |||||||    
T  39073451 tttcagccaccacaaagaataatattctactttt 39073484  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 48129794 - 48130023
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaag 106  Q
    |||| |||| || ||||||||||||||||||||||||||||  |||||||||   ||||||| ||| |||||||| | ||||||||  ||||||||||||    
T  48129794 tttcggccatcataaagaataatattttactttttcaagtagttgataactatcgcattcctgattgttaaacaatcgattatttctttcattccacaag 48129893  T
Q  107 atccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacct 206  Q
    ||||| || |||| ||||||||||      |||||||| ||||| |||||| | |||||||| ||||||||| | || || | | ||||   ||||||||    
T  48129894 atccaggagcacaaaagtcatatg------agaaaattacgccgtgctttcaggccacctgtataataaatagactgattgaggcgatcatgaataacct 48129987  T
Q  207 gagtgtccacaccatcaaaactggtccatgctcgca 242  Q
    || |||| ||||||||||| | | |||| |||||||    
T  48129988 gaatgtcaacaccatcaaacccgatccacgctcgca 48130023  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 26084202 - 26083984
Alignment:
Q  7 tttcagccaccacaaagaataatattttactttttcaagtaactgataactacaacattccttatttttaaacaacctattatttcgctcattccacaag 106  Q
    |||||||| |||  || ||||||| || |||||||| ||||  |||||||||  |||||| | |||||||||||||| ||||||||  ||  || ||||     
T  26084202 tttcagcccccatgaaaaataatacttaactttttctagtagttgataactagtacattcatgatttttaaacaaccgattatttctttcggtctacaaa 26084103  T
Q  107 atccaagaacacataagtcatatgagttgtagaaaatttcgccgcgctttcggaccacctgtgtaataaataaattggttaaagtgatctgaaataacct 206  Q
    ||||| || |||| |||| ||||||| || |||||||| || || |||||| ||||| ||||||||||||||||  | |  ||||||||   |||| |||    
T  26084102 atccaggagcacaaaagttatatgagatgaagaaaattacgtcgtgctttcagaccatctgtgtaataaataaacggatggaagtgatcgtgaatagcct 26084003  T
Q  207 gagtgtccacaccatcaaa 225  Q
    ||||||| |||||||||||    
T  26084002 gagtgtcgacaccatcaaa 26083984  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 3168568 - 3168600
Alignment:
Q  7 tttcagccaccacaaagaataatattttacttt 39  Q
    ||||| |||||||||||||||||||||||||||    
T  3168568 tttcaaccaccacaaagaataatattttacttt 3168600  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 45290 - 45258
Alignment:
Q  7 tttcagccaccacaaagaataatattttacttt 39  Q
    ||||||||||||||| |||||||||||||||||    
T  45290 tttcagccaccacaacgaataatattttacttt 45258  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 87683 - 87651
Alignment:
Q  7 tttcagccaccacaaagaataatattttacttt 39  Q
    ||||| |||||||||||||||||||||||||||    
T  87683 tttcaaccaccacaaagaataatattttacttt 87651  T

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