View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_9 (Length: 700)

Name: NF2158_low_9
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_9
NF2158_low_9
[»] chr3 (1 HSPs)
chr3 (20-643)||(24144534-24145144)
[»] chr8 (3 HSPs)
chr8 (290-456)||(18184370-18184546)
chr8 (291-334)||(43108185-43108228)
chr8 (393-429)||(44058805-44058841)
[»] chr4 (4 HSPs)
chr4 (290-429)||(22318096-22318245)
chr4 (393-456)||(30666944-30667007)
chr4 (351-456)||(21519589-21519704)
chr4 (393-429)||(53210100-53210136)
[»] chr7 (4 HSPs)
chr7 (351-430)||(2512846-2512935)
chr7 (619-695)||(23457395-23457471)
chr7 (352-393)||(30961608-30961649)
chr7 (638-690)||(1505590-1505642)
[»] chr1 (2 HSPs)
chr1 (393-456)||(30058459-30058522)
chr1 (393-429)||(36567352-36567388)
[»] chr6 (3 HSPs)
chr6 (392-456)||(15528322-15528386)
chr6 (290-341)||(11753066-11753117)
chr6 (393-422)||(12216901-12216930)
[»] chr5 (1 HSPs)
chr5 (619-669)||(7148310-7148360)
[»] chr2 (2 HSPs)
chr2 (619-695)||(25557864-25557940)
chr2 (396-456)||(35813766-35813826)


Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 20 - 643
Target Start/End: Complemental strand, 24145144 - 24144534
Alignment:
Q  20 gataaaataatgcatatgtgtcaagtagaagtggccaaacataagcagtgcatggcatttatcttacacataaaaagtagtaacatattaactatcccct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24145144 gataaaataatgcatatgtgtcaagtagaagtggccaaacataagcagtgcatggcatttatcttacacataaaaagtagtaacatattaactatcccct 24145045  T
Q  120 ccgtttggtaacaataatgagtctccaattcatgaacctagcttgtgtcggtaaacctagtagaatgttagaagatggaccactctatggttcatttata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24145044 ccgtttggtaacaataatgagtctccaattcatgaacctagcttgtgtcggtaaacctagtagaatgttagaagatggaccactctatggttcatttata 24144945  T
Q  220 tgctttttgaacacaacgtacaactattggaagagattgtgcacatttataatgattgattaattaatgagaaatattaacttgtgttcttgggacataa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||    
T  24144944 tgctttttgaacacaacgtacaactattggaagagattgtgcacatttataatgatggattaatttatgagaaatgttaacttatgttcttgggacataa 24144845  T
Q  320 gttaaggaagcaaatataaaaacnnnnnnnnaaaagctgtgcattcaatactttgaaagtttcaaaagttatcaaaatttatttgttaattctattttaa 419  Q
    |||||||| ||||||||| ||||        ||||| |||||||||||| |||||||||||| ||||||||| ||||||||||| | |    |           
T  24144844 gttaaggatgcaaatatagaaactttttcttaaaagttgtgcattcaatgctttgaaagttttaaaagttattaaaatttatttatgagaaat------- 24144752  T
Q  420 gctctttaaccagtgcctttagggcacaagttaacatcatctttaatttatacataagaatggaaactctcaaataggtacctcaactcgtaacttgagg 519  Q
         |||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24144751 ----gttaacctgtgcctttagggcacaagttagcatcatccttaatttatacatatgaatggaaactctcaaataggtacctcaactcgtaacttgagg 24144656  T
Q  520 ggagttaaatgagttttagcgaaggttcatcgaattgagaaggtgttgtctccaattctagttaggacattaaaggagaaacttctcccatacaaacttg 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24144655 ggagttaaatgagttttagcgaaggttcatcgaattgagaaggtgtag--tccaattctagttaggacattaaaggagaaacttctcccatacaaacttg 24144558  T
Q  620 ctcactcccatacagcctgaccaa 643  Q
    |||||||||||||| |||||||||    
T  24144557 ctcactcccatacaacctgaccaa 24144534  T

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Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 18184546 - 18184370
Alignment:
Q  290 gaaatattaacttgtgttcttgggacataagttaaggaagcaaatataaaaacnnnnnnnnaaaagctgtgcattcaatactttgaaagtttcaaaagtt 389  Q
    ||||| |||||||||||  ||| | ||||||||||||||||||||||| ||||        ||||| |||||||||||| ||||||||||||||||||||    
T  18184546 gaaatgttaacttgtgtcattgaggcataagttaaggaagcaaatatagaaactttttcttaaaagttgtgcattcaatgctttgaaagtttcaaaagtt 18184447  T
Q  390 atca----------aaatttatttgttaattctattttaagctctttaaccagtgcctttagggcacaagttaacat 456  Q
    ||||          |||||||||||||||||||||||||||||| |||||| |||   | | |||||||||||||||    
T  18184446 atcatttaaatattaaatttatttgttaattctattttaagctccttaacctgtgttctaaaggcacaagttaacat 18184370  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 43108185 - 43108228
Alignment:
Q  291 aaatattaacttgtgttcttgggacataagttaaggaagcaaat 334  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  43108185 aaatattaacttgtgttcttgggacataagttaagaaatcaaat 43108228  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 44058805 - 44058841
Alignment:
Q  393 aaaatttatttgttaattctattttaagctctttaac 429  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  44058805 aaaatttatttcttaattctattttaagctccttaac 44058841  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 429
Target Start/End: Original strand, 22318096 - 22318245
Alignment:
Q  290 gaaatattaacttgtgttcttgggacataagttaaggaagcaaatataaaaacnnnnnnnnaaaagctgtgcattcaatactttgaaagtttcaaaagtt 389  Q
    ||||| |||| ||||| ||||||| |||||||||||||| ||||| || ||||        ||||| |||||||| ||| ||||||||||||||||||||    
T  22318096 gaaatgttaatttgtgctcttggggcataagttaaggaaccaaatgtagaaacttttttttaaaagttgtgcatttaatgctttgaaagtttcaaaagtt 22318195  T
Q  390 atc----------aaaatttatttgttaattctattttaagctctttaac 429  Q
    |||          |||||||||||||||||||||||||||| || |||||    
T  22318196 atcatttaaatataaaatttatttgttaattctattttaagttccttaac 22318245  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 30666944 - 30667007
Alignment:
Q  393 aaaatttatttgttaattctattttaagctctttaaccagtgcctttagggcacaagttaacat 456  Q
    ||||||||||| | | ||||||||||||||| |||||  ||||| |||||||||||||||||||    
T  30666944 aaaatttatttttaatttctattttaagctccttaacttgtgcccttagggcacaagttaacat 30667007  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 456
Target Start/End: Original strand, 21519589 - 21519704
Alignment:
Q  351 aaaagctgtgcattcaatactttgaaagtttcaaaagttatca----------aaatttatttgttaattctattttaagctctttaaccagtgccttta 440  Q
    ||||| |||||||||||| |||||||||||| |||| ||||||          |||||||||||||| |||||||||||| || |||| | ||||| |||    
T  21519589 aaaagttgtgcattcaatgctttgaaagttttaaaaattatcatttaaatattaaatttatttgttatttctattttaagatccttaatctgtgccctta 21519688  T
Q  441 gggcacaagttaacat 456  Q
    | | ||||||||||||    
T  21519689 gagtacaagttaacat 21519704  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 53210100 - 53210136
Alignment:
Q  393 aaaatttatttgttaattctattttaagctctttaac 429  Q
    ||||||||||||||||||||||||||| |||||||||    
T  53210100 aaaatttatttgttaattctattttaaactctttaac 53210136  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 2512846 - 2512935
Alignment:
Q  351 aaaagctgtgcattcaatactttgaaagtttcaaaagttatca----------aaatttatttgttaattctattttaagctctttaacc 430  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||          |||||||||||||||||||||||||||||| ||||||    
T  2512846 aaaagttgtgcattcaatactttggaagtttcaaaaattatcatttaaatattaaatttatttgttaattctattttaagctccttaacc 2512935  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 695
Target Start/End: Complemental strand, 23457471 - 23457395
Alignment:
Q  619 gctcactcccatacagcctgaccaaaataccttctacgtgagttaactcacattccataagttgcagtataatctac 695  Q
    ||||||||||||| |  || |||||||||||||| |||||||||||||||||||   ||||||| ||||||| ||||    
T  23457471 gctcactcccataaaaacttaccaaaataccttccacgtgagttaactcacatttggtaagttggagtataacctac 23457395  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 30961649 - 30961608
Alignment:
Q  352 aaagctgtgcattcaatactttgaaagtttcaaaagttatca 393  Q
    |||| |||||||||||| ||||||||| ||||||||||||||    
T  30961649 aaagttgtgcattcaatgctttgaaagattcaaaagttatca 30961608  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 638 - 690
Target Start/End: Original strand, 1505590 - 1505642
Alignment:
Q  638 gaccaaaataccttctacgtgagttaactcacattccataagttgcagtataa 690  Q
    |||||||||||| || | |||||||||||||||||| ||||| || |||||||    
T  1505590 gaccaaaataccctccatgtgagttaactcacattcgataagctgaagtataa 1505642  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 30058459 - 30058522
Alignment:
Q  393 aaaatttatttgttaattctattttaagctctttaaccagtgcctttagggcacaagttaacat 456  Q
    ||||||||||  |||||||||||||||| ||||||||  ||||| |||||| ||||||||||||    
T  30058459 aaaatttattacttaattctattttaagttctttaacttgtgcccttagggtacaagttaacat 30058522  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 393 - 429
Target Start/End: Complemental strand, 36567388 - 36567352
Alignment:
Q  393 aaaatttatttgttaattctattttaagctctttaac 429  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  36567388 aaaatttatttgttaattctattttaaactccttaac 36567352  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 15528386 - 15528322
Alignment:
Q  392 caaaatttatttgttaattctattttaagctctttaaccagtgcctttagggcacaagttaacat 456  Q
    |||||||||||| | | ||||||||||| ||| |||||  ||||| |||||||||||||||||||    
T  15528386 caaaatttatttttaatttctattttaatctccttaacttgtgcccttagggcacaagttaacat 15528322  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 11753117 - 11753066
Alignment:
Q  290 gaaatattaacttgtgttcttgggacataagttaaggaagcaaatataaaaa 341  Q
    ||||| ||||||||||  |||||||||||||||||| || ||||||||||||    
T  11753117 gaaatgttaacttgtgcccttgggacataagttaagaaaccaaatataaaaa 11753066  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 12216930 - 12216901
Alignment:
Q  393 aaaatttatttgttaattctattttaagct 422  Q
    ||||||||||||||||||||||||||||||    
T  12216930 aaaatttatttgttaattctattttaagct 12216901  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 669
Target Start/End: Original strand, 7148310 - 7148360
Alignment:
Q  619 gctcactcccatacagcctgaccaaaataccttctacgtgagttaactcac 669  Q
    |||||||||||||||  |||||||||||||   ||||||||||||||||||    
T  7148310 gctcactcccatacaaactgaccaaaatactccctacgtgagttaactcac 7148360  T

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Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 695
Target Start/End: Original strand, 25557864 - 25557940
Alignment:
Q  619 gctcactcccatacagcctgaccaaaataccttctacgtgagttaactcacattccataagttgcagtataatctac 695  Q
    |||||||||||||||  |||||||||||||   | ||||| ||||||||||||||  |||| || ||||||| ||||    
T  25557864 gctcactcccatacaaactgaccaaaatactccccacgtgtgttaactcacattcggtaagatgaagtataacctac 25557940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 35813826 - 35813766
Alignment:
Q  396 atttatttgttaattctattttaagctctttaaccagtgcctttagggcacaagttaacat 456  Q
    |||||||  ||| |||||||||||| |||||| |  ||||| |||||||||||||||||||    
T  35813826 atttattgtttatttctattttaagatctttatcttgtgcccttagggcacaagttaacat 35813766  T

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