View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_90 (Length: 258)
Name: NF2158_low_90
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 17269686 - 17269478
Alignment:
| Q |
33 |
tttaaaaaattaatcaaagacaaatgtatgatctcatgttgtaaacaaaagactttgattggaaggatttaaatcaaatttgaataacaaatggtgttca |
132 |
Q |
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| T |
17269686 |
tttaaaaaattaatcaaagacaaatatatgatctcatgttgtaaacaaaagactttgattggaaggatttaaatcaaatttgaataacaaatggtgttca |
17269587 |
T |
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| Q |
133 |
aggaacaatctttgacctatagatttcgcaggtacgaggagctatcaaacaaaacaagaaaaccatagtatatccactatgcatgactccatggaatttt |
232 |
Q |
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| T |
17269586 |
aggaacaatctttgacctatagatttcgcaggtacgaggagctatcaaacaaaacaagaaaaccatagtatatccactatgcatgactccatggaatttt |
17269487 |
T |
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| Q |
233 |
atttattct |
241 |
Q |
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||||||||| |
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| T |
17269486 |
atttattct |
17269478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17269747 - 17269712
Alignment:
| Q |
1 |
aaatttagaactgtgcaaatatctaccaaactttta |
36 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
17269747 |
aaatttagaactatgcaaatatctaccaaactttta |
17269712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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