View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21590_high_1 (Length: 877)

Name: NF21590_high_1
Description: NF21590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21590_high_1
NF21590_high_1
[»] chr1 (9 HSPs)
chr1 (18-853)||(36754794-36755629)
chr1 (657-769)||(20816895-20817006)
chr1 (676-773)||(17048058-17048155)
chr1 (686-770)||(34488588-34488672)
chr1 (679-773)||(11833671-11833765)
chr1 (655-769)||(22669024-22669138)
chr1 (703-754)||(10751556-10751607)
chr1 (660-754)||(1634920-1635014)
chr1 (241-366)||(10649623-10649748)
[»] chr2 (13 HSPs)
chr2 (297-401)||(18114692-18114796)
chr2 (624-815)||(16748014-16748203)
chr2 (659-773)||(24386337-24386451)
chr2 (659-754)||(27483804-27483899)
chr2 (655-752)||(21538453-21538550)
chr2 (650-748)||(12061203-12061302)
chr2 (703-773)||(13896937-13897006)
chr2 (703-773)||(14037554-14037623)
chr2 (679-769)||(18115082-18115172)
chr2 (655-741)||(22108280-22108366)
chr2 (684-770)||(35511828-35511914)
chr2 (660-693)||(24109118-24109151)
chr2 (665-758)||(31851192-31851285)
[»] chr8 (12 HSPs)
chr8 (611-773)||(19342158-19342320)
chr8 (611-773)||(19371656-19371818)
chr8 (655-761)||(12843488-12843594)
chr8 (659-773)||(22881699-22881813)
chr8 (680-771)||(25809562-25809653)
chr8 (620-730)||(10650312-10650422)
chr8 (671-773)||(20707146-20707248)
chr8 (679-770)||(28458049-28458138)
chr8 (703-754)||(24502368-24502419)
chr8 (665-742)||(17872012-17872089)
chr8 (266-312)||(28458495-28458541)
chr8 (697-770)||(15610249-15610322)
[»] chr6 (5 HSPs)
chr6 (218-494)||(33546133-33546414)
chr6 (485-740)||(12869801-12870066)
chr6 (679-773)||(14761285-14761378)
chr6 (19-55)||(33545933-33545969)
chr6 (513-693)||(33546463-33546652)
[»] chr3 (5 HSPs)
chr3 (615-819)||(23528299-23528503)
chr3 (665-769)||(4596840-4596944)
chr3 (671-754)||(9796540-9796623)
chr3 (703-776)||(9828934-9829006)
chr3 (697-765)||(2906526-2906594)
[»] chr7 (18 HSPs)
chr7 (623-773)||(11739526-11739676)
chr7 (656-768)||(39199758-39199872)
chr7 (645-762)||(23662258-23662375)
chr7 (698-765)||(3316119-3316186)
chr7 (655-770)||(6414881-6414996)
chr7 (655-765)||(23183444-23183554)
chr7 (700-765)||(7681513-7681578)
chr7 (645-762)||(23655457-23655574)
chr7 (381-489)||(11739878-11739986)
chr7 (700-765)||(7666254-7666319)
chr7 (681-738)||(19650724-19650781)
chr7 (653-773)||(7144564-7144683)
chr7 (319-405)||(10677300-10677391)
chr7 (655-762)||(32561883-32561988)
chr7 (679-773)||(1675008-1675102)
chr7 (669-747)||(1783369-1783447)
chr7 (677-758)||(4122590-4122671)
chr7 (684-773)||(39227386-39227475)
[»] chr4 (14 HSPs)
chr4 (615-770)||(35150106-35150261)
chr4 (665-773)||(24715650-24715758)
chr4 (683-773)||(12285764-12285854)
chr4 (294-403)||(24715975-24716089)
chr4 (644-761)||(9736410-9736527)
chr4 (665-740)||(9883032-9883107)
chr4 (620-739)||(19601508-19601627)
chr4 (702-773)||(20748672-20748743)
chr4 (679-765)||(7221262-7221347)
chr4 (22-72)||(9855971-9856021)
chr4 (20-55)||(17651761-17651796)
chr4 (655-726)||(23692967-23693038)
chr4 (249-375)||(1185828-1185954)
chr4 (724-765)||(16300692-16300733)
[»] chr5 (9 HSPs)
chr5 (710-776)||(24558953-24559019)
chr5 (710-776)||(24599985-24600051)
chr5 (683-773)||(11848263-11848353)
chr5 (509-600)||(15990752-15990843)
chr5 (653-739)||(18807449-18807535)
chr5 (622-723)||(17771693-17771794)
chr5 (297-348)||(15990892-15990943)
chr5 (655-724)||(16687129-16687198)
chr5 (418-447)||(25954561-25954590)
[»] scaffold0466 (1 HSPs)
scaffold0466 (665-773)||(4317-4425)


Alignment Details
Target: chr1 (Bit Score: 756; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 18 - 853
Target Start/End: Complemental strand, 36755629 - 36754794
Alignment:
Q  18 ctagagagtggtaaactaacttaaagctcaatagacttaaaaacacttaagaaatcttaacatagaaaaattataagaattgtctaagtgtgtgtgctat 117  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  36755629 ctagagagtggtaaactaacttaaagctcaatagatttgaaaacacttaagaaatcttaacatagaaaatttataagaattgtctaagtgtgtgcgctat 36755530  T
Q  118 ataatttatcaaagttttggcactgttttcaaacgtgaagtctctctcttttttaaactgctcatggttctttttataagtgaaaataatagaatcgttg 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755529 ataatttatcaaagttttggcactgtttttaaacgtgaagtctctctcttttttaaactgctcatggttctttttataagtgaaaataatagaatcgttg 36755430  T
Q  218 ttgaaaaattgtcagcgcataagtcttccttgagaagttttgaatagatttgaaagctctgcttctaatggatgactctgttgaatagtactagaggttt 317  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  36755429 ttgaaaaattgccagcgcataagtcttccttgagaagttttgaatagatttgaaagctttgcttctaatggatgactatgttgaatagtactagaggttt 36755330  T
Q  318 cttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttgttttgcacgtggtcagaagaagacaaacaatattgcagaacttga 417  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755329 cttttgcttcttttggaataatctgttgcattctatttgcctttgaaaagctttgttttgcacgtggtcagaagaagacaaacaatattgcagaacttga 36755230  T
Q  418 aaagcgacatttctttagaagaagacaaaattgatcagcttccatcaaagtgttgaccaatgacatgtccattagagtctgctttcatcataatcttcaa 517  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755229 aaagcgacatttctttagaagaggacaaaactgatcagcgtccatcaaagtgttgaccaatgacatgtccattagagtctgctttcatcataatcttcaa 36755130  T
Q  518 ggcttgatgcatcttctaattagagctttgaattttgttgaactttcttcatatcatagttttagtcatcatagcttcttcttgattaccaaatgcattc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36755129 ggcttgatgcatcttctaattagagctttgaattttgttgaactttcttcatatcatagttttagtcatcatagcttcttcttgagtaccaaatgcattc 36755030  T
Q  618 aaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctt 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755029 aaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctt 36754930  T
Q  718 tcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcctccttttcgatggttacaaacttatgtatttta 817  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  36754929 tcatacattgttatcatcaaaactttagagatattgttctaaaacccactttggttaaaaaatcccccccttttcgatggttacaaacttatgtatttta 36754830  T
Q  818 aaaaagttgctaaatgttgtctagcatggaattcat 853  Q
    ||||||||| | ||||||||||||||||||||||||    
T  36754829 aaaaagttgatgaatgttgtctagcatggaattcat 36754794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 657 - 769
Target Start/End: Complemental strand, 20817006 - 20816895
Alignment:
Q  657 tcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttc 756  Q
    ||||||| |||||||||| |||||||||||| ||||| | ||| ||||| |||||||||||||||||||| ||| ||| ||||| ||||||| |||||||    
T  20817006 tcagaatttaattttatggtcctgcacacttcaacacacatta-agtattcaattgttctttcatacattgttatcattaaaacattagagacattgttc 20816908  T
Q  757 taaaacccacttt 769  Q
    |||||||||||||    
T  20816907 taaaacccacttt 20816895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 676 - 773
Target Start/End: Complemental strand, 17048155 - 17048058
Alignment:
Q  676 tcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    |||||||||||||||||| | ||| | |||||||||||| ||||||||||| ||| || |||||| ||||| ||||||||||||||| ||||||||||    
T  17048155 tcctgcacacttgaacacacattaaaatatccaattgttatttcatacatttttatcaacaaaaccttagatatattgttctaaaactcactttggtt 17048058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 686 - 770
Target Start/End: Original strand, 34488588 - 34488672
Alignment:
Q  686 ttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 770  Q
    |||||||| | |||||||||| |||||||||||||||| |||||| |||||||||| |||| | |||||||||||||||||||||    
T  34488588 ttgaacacacattagagtatcaaattgttctttcataccttattatcatcaaaactctagatacattgttctaaaacccactttg 34488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 679 - 773
Target Start/End: Original strand, 11833671 - 11833765
Alignment:
Q  679 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    |||||| |||||||| | ||||||| || |||| || |||||||| |||||| ||| ||||||||||||| |||||| |||||| ||||||||||    
T  11833671 tgcacaattgaacacacattagagtttcaaattattttttcatacgttattatcattaaaactttagagacattgttttaaaactcactttggtt 11833765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 769
Target Start/End: Complemental strand, 22669138 - 22669024
Alignment:
Q  655 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    ||||| ||| ||||| |||| |||||||||||||||||    |||||||| | |||| |||||||||||||| ||| ||| ||||| ||  | | ||| |    
T  22669138 agtcaaaatttaattatatggtcctgcacacttgaacaaatattagagtaccaaattcttctttcatacattgttatcataaaaaccttgaaaacattat 22669039  T
Q  755 tctaaaacccacttt 769  Q
    |||||||||||||||    
T  22669038 tctaaaacccacttt 22669024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 754
Target Start/End: Original strand, 10751556 - 10751607
Alignment:
Q  703 tatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    |||||||||||||||| |||| || ||| ||||||||||||||||| |||||    
T  10751556 tatccaattgttctttaatactttgttatcatcaaaactttagagacattgt 10751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 660 - 754
Target Start/End: Complemental strand, 1635014 - 1634920
Alignment:
Q  660 gaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    |||| ||||| |||| ||||||||||||||||||   ||||  |||||||||||||  | |||| |||||| |||||||||| | |||| |||||    
T  1635014 gaatttaattctatgctcctgcacacttgaacacatattagcctatccaattgttcacttataccttattatcatcaaaactctggagacattgt 1634920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 10649748 - 10649623
Alignment:
Q  241 tcttccttgagaagttttgaatagatttgaaagctctgcttctaatggatgactctgttgaatagtactagaggtttcttttgcttcttttggaataatc 340  Q
    |||||||||||||| ||| | ||| ||| |||||| ||| ||| |||||| | | ||||||||| ||| ||||   || ||||||||||||||||| ||     
T  10649748 tcttccttgagaagctttaattaggtttaaaagctttgcctctgatggataattttgttgaataataccagagagatcatttgcttcttttggaatgatg 10649649  T
Q  341 tgttgcattctatttggttttgaaaa 366  Q
      ||||||||| ||||  ||||||||    
T  10649648 cattgcattctctttgcctttgaaaa 10649623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 297 - 401
Target Start/End: Original strand, 18114692 - 18114796
Alignment:
Q  297 gttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttgttttgcacgtggtcagaagaagac 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  18114692 gttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcattctatttgcctttgaaaagctttgttttgcacgtggtcagaagaagac 18114791  T
Q  397 aaaca 401  Q
    |||||    
T  18114792 aaaca 18114796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 624 - 815
Target Start/End: Complemental strand, 16748203 - 16748014
Alignment:
Q  624 tggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatac 723  Q
    |||||||| |||||||| || |||| |||| ||||| ||| | |||||||| | || |||| |||||||| | ||||||||| ||| |||||||||||||    
T  16748203 tggtgtttcagaaccaataaattgatttca-agtcaaaatttgattttatggttctacacatttgaacacacattagagtattcaactgttctttcatac 16748105  T
Q  724 attattaccatcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcctccttttcgatggttacaaacttatgtattt 815  Q
    ||||||| ||||||||  ||||| | |||||||||||||||| ||||||| |  ||| ||||||||||  ||| | ||||||||||| ||||    
T  16748104 attattatcatcaaaatcttagaaacattgttctaaaaccca-tttggttcatcaatttcctccttttttatgataacaaacttatggattt 16748014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 659 - 773
Target Start/End: Original strand, 24386337 - 24386451
Alignment:
Q  659 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 758  Q
    ||||| ||||| |||| || ||||||||||||||| | ||| | ||   ||||||||||||||||||||||| ||| ||||| |||| ||||||||||||    
T  24386337 agaatttaattctatggtcatgcacacttgaacacacattaaattactaaattgttctttcatacattattatcataaaaaccttagggatattgttcta 24386436  T
Q  759 aaacccactttggtt 773  Q
    |||||||||||||||    
T  24386437 aaacccactttggtt 24386451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 659 - 754
Target Start/End: Complemental strand, 27483899 - 27483804
Alignment:
Q  659 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    ||||| |||||||||| |||||||||||||||||| | |||   |||| ||||||||||||| || || |||  |||||||||| ||||| |||||    
T  27483899 agaatttaattttatggtcctgcacacttgaacacacattaatatatcaaattgttctttcaaactttgttatgatcaaaacttcagagacattgt 27483804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 752
Target Start/End: Complemental strand, 21538550 - 21538453
Alignment:
Q  655 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatatt 752  Q
    ||||||||| ||||| |||| || | | || |||||||| |  ||||||| | ||||||||||||||||||| ||| ||||||||||| | |||||||    
T  21538550 agtcagaatttaattatatggtctttcccaattgaacacacaatagagtaccaaattgttctttcatacattgttatcatcaaaacttaaaagatatt 21538453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 748
Target Start/End: Original strand, 12061203 - 12061302
Alignment:
Q  650 ttcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttc-tttcatacattattaccatcaaaactttagaga 748  Q
    |||||||||||||  ||| |||||||| |||||||||| ||| | | |||   |||| |||||||| |||||||| |||||| ||||||||||| |||||    
T  12061203 ttcagagtcagaaattaagtttatgattctgcacacttaaactcacattaacatatctaattgttcttttcatactttattatcatcaaaacttcagaga 12061302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 703 - 773
Target Start/End: Original strand, 13896937 - 13897006
Alignment:
Q  703 tatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    ||||||||| |||||||| || || ||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  13896937 tatccaatttttctttcaaactttgttatcatcaaaacttaagagacattgtt-taaaacccattttggtt 13897006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 703 - 773
Target Start/End: Original strand, 14037554 - 14037623
Alignment:
Q  703 tatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    ||||||||| |||||||| || || ||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  14037554 tatccaatttttctttcaaactttgttatcatcaaaacttaagagacattgtt-taaaacccattttggtt 14037623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 679 - 769
Target Start/End: Original strand, 18115082 - 18115172
Alignment:
Q  679 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccacttt 769  Q
    ||||||||||| ||| | |||||||| |||||| |||||| |||| || ||| ||||||||| ||||| | |||||  |||| ||||||||    
T  18115082 tgcacacttgagcacacattagagtacccaattattcttttatacgttgttatcatcaaaaccttagaaaaattgtgttaaaccccacttt 18115172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 655 - 741
Target Start/End: Complemental strand, 22108366 - 22108280
Alignment:
Q  655 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaact 741  Q
    ||||||| | ||||| ||||||| ||||||||||||||| | ||| | |||  ||||| ||||||| | ||||||| ||||||||||    
T  22108366 agtcagattttaattatatgatcatgcacacttgaacacacattataatataaaattgctctttcacatattattatcatcaaaact 22108280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 770
Target Start/End: Complemental strand, 35511914 - 35511828
Alignment:
Q  684 acttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 770  Q
    |||||||||  | |||||||||| |||| |||||| ||||||  ||| ||||||||| ||| | | ||||||||||||| |||||||    
T  35511914 acttgaacatacattagagtatcaaattattcttttatacatcgttatcatcaaaacattaaaaacattgttctaaaactcactttg 35511828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 693
Target Start/End: Complemental strand, 24109151 - 24109118
Alignment:
Q  660 gaatataattttatgatcctgcacacttgaacac 693  Q
    |||| |||||||||||||||||||||||||||||    
T  24109151 gaatttaattttatgatcctgcacacttgaacac 24109118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 758
Target Start/End: Complemental strand, 31851285 - 31851192
Alignment:
Q  665 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 758  Q
    ||||| ||||||| ||||||||||||||  | ||||| |||| ||||||||||  ||||| | ||  || |||||| ||||| |||||||||||    
T  31851285 taattatatgatcatgcacacttgaacaaactttagaatatctaattgttcttctatacactgttgtcaccaaaaccttagaaatattgttcta 31851192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 5e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 611 - 773
Target Start/End: Complemental strand, 19342320 - 19342158
Alignment:
Q  611 tgcattcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaat 710  Q
    ||||||||||  ||||| ||| |||||||||||||||| |||||||| ||||| |||||||||| | |||||||||||||||| | || | |||||||||    
T  19342320 tgcattcaaattttggtatttcagaaccaacaagttgacttcagagttagaatttaattttatggtactgcacacttgaacacacatttgtgtatccaat 19342221  T
Q  711 tgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  19342220 tgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggtt 19342158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 611 - 773
Target Start/End: Complemental strand, 19371818 - 19371656
Alignment:
Q  611 tgcattcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaat 710  Q
    ||||||||||  ||||||||| | |||||||| ||||| |||||||| ||||| ||||||| || | |||||||||||||||| | || | |||||||||    
T  19371818 tgcattcaaattttggtgtttcataaccaacaggttgacttcagagttagaatttaattttgtggtactgcacacttgaacacacatttgtgtatccaat 19371719  T
Q  711 tgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  19371718 tgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggtt 19371656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 655 - 761
Target Start/End: Original strand, 12843488 - 12843594
Alignment:
Q  655 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    ||||||||| ||||| |||| |||||||||||||||||| | |||| |||||||||| |||||||||||||||||| |||||||||| |||||| | |||    
T  12843488 agtcagaatttaattatatggtcctgcacacttgaacacacattagcgtatccaattattctttcatacattattatcatcaaaactctagagacactgt 12843587  T
Q  755 tctaaaa 761  Q
    |||||||    
T  12843588 tctaaaa 12843594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 659 - 773
Target Start/End: Original strand, 22881699 - 22881813
Alignment:
Q  659 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 758  Q
    ||||| ||||| |||| || | |||||| |||||| | |||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||    
T  22881699 agaatttaattatatggtcatacacactagaacacacattagagtatccaattgttctttcatatattattatcatcaaaaccttagagacattgttcta 22881798  T
Q  759 aaacccactttggtt 773  Q
    |||| ||||||||||    
T  22881799 aaactcactttggtt 22881813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 680 - 771
Target Start/End: Original strand, 25809562 - 25809653
Alignment:
Q  680 gcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttgg 771  Q
    ||||||| |||||| | ||||||||||||||| |||||| |||| || ||| |||||||||  || ||| ||||||||||||||||||||||    
T  25809562 gcacactcgaacacacattagagtatccaattattcttttatactttgttaacatcaaaaccatatagacattgttctaaaacccactttgg 25809653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 620 - 730
Target Start/End: Original strand, 10650312 - 10650422
Alignment:
Q  620 agcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttc 719  Q
    |||||||||||| | |||||||||||||| |||| ||||| ||| |||||||||| | | |||||  ||||||| | |||||| ||||||| ||||||||    
T  10650312 agcttggtgtttcaaaaccaacaagttgacttcaaagtcataatttaattttatggttcggcacatatgaacacacattagagcatccaatcgttctttc 10650411  T
Q  720 atacattatta 730  Q
    ||  |||||||    
T  10650412 attgattatta 10650422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 671 - 773
Target Start/End: Original strand, 20707146 - 20707248
Alignment:
Q  671 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 770  Q
    |||| |||| ||||||||||||| | |||||||||| ||||||||||||| ||||| ||| |||  |||| ||| ||| |||||| |||||| |||||||    
T  20707146 tatggtcctacacacttgaacacacattagagtatctaattgttctttcaaacattgttatcatttaaaccttatagacattgttttaaaactcactttg 20707245  T
Q  771 gtt 773  Q
    |||    
T  20707246 gtt 20707248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 679 - 770
Target Start/End: Complemental strand, 28458138 - 28458049
Alignment:
Q  679 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 770  Q
    ||||||||| ||||| | ||||||||  ||||| |||||||| ||||| ||||||||||| | ||| || ||||||||||||| ||||||||    
T  28458138 tgcacacttaaacacacattagagta--caattattctttcacacattgttaccatcaaacccttataggtattgttctaaaatccactttg 28458049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 703 - 754
Target Start/End: Complemental strand, 24502419 - 24502368
Alignment:
Q  703 tatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    |||||||||||||||| |||| |||||| |||||||||||||||| ||||||    
T  24502419 tatccaattgttctttaatactttattatcatcaaaactttagaggtattgt 24502368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 665 - 742
Target Start/End: Complemental strand, 17872089 - 17872012
Alignment:
Q  665 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactt 742  Q
    ||||| |||||||||||| ||||||||||   ||||  |||| ||||||||||| ||||||| ||| |||||||||||    
T  17872089 taattctatgatcctgcatacttgaacacaaattagcatatcaaattgttcttttatacattgttatcatcaaaactt 17872012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 28458541 - 28458495
Alignment:
Q  266 tttgaaagctctgcttctaatggatgactctgttgaatagtactaga 312  Q
    |||||||||||||| |||||||||| | |||||||||| ||||||||    
T  28458541 tttgaaagctctgcctctaatggataattctgttgaattgtactaga 28458495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 770
Target Start/End: Original strand, 15610249 - 15610322
Alignment:
Q  697 ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 770  Q
    |||||||| | | |||||||| || ||||| |||  |||||||| ||| ||| |||||||||||||||||||||    
T  15610249 ttagagtaacaagttgttcttacacacatttttattatcaaaaccttatagacattgttctaaaacccactttg 15610322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 218 - 494
Target Start/End: Original strand, 33546133 - 33546414
Alignment:
Q  218 ttgaaaaattgtcagcgcataagtcttccttgagaagttttgaatagatttgaaagctctgcttctaatggatgactctgttgaatagtactagaggttt 317  Q
    ||||| || ||||| | ||||| |||||||||||||| |||||  || |||||||| | ||  |||||||||| | ||  |||||||||| |||||||||    
T  33546133 ttgaagaagtgtcaacacataaatcttccttgagaagctttgatcaggtttgaaagttttgtctctaatggataattcaattgaatagtaatagaggttt 33546232  T
Q  318 cttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttgttt-----tgcacgtggtcagaagaagacaaacaatattgcagaa 412  Q
      | || |||||||||||| || ||||| ||||| | ||  |||||||| ||||||||     ||||| ||||||||||||||||||||||| |||| ||    
T  33546233 tctatgattcttttggaatgatatgttgtattctctatgcatttgaaaaactttgtttgtttctgcacatggtcagaagaagacaaacaatactgcataa 33546332  T
Q  413 cttgaaaagcgacatttctttagaagaagacaaaattgatcagcttccatcaaagtgttgaccaatgacatgtccattagag 494  Q
    |||| || ||||| | |||| | || |||| |||| |  ||||  ||||||| |||||||||||||||||||||||||||||    
T  33546333 cttggaatgcgacgtctcttcaaaaaaagaaaaaactagtcagggtccatcagagtgttgaccaatgacatgtccattagag 33546414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 485 - 740
Target Start/End: Complemental strand, 12870066 - 12869801
Alignment:
Q  485 tccattagagtctgctttcatcataatcttcaaggcttgatgcatcttctaattagagctttga-attttgttgaactttcttcatatcatagttttagt 583  Q
    ||||||||||| || |||||||| |  |||||||||||||||||||||||||||||| |||||| ||||| |||| ||||||||| ||||||||   |||    
T  12870066 tccattagagtatgttttcatcaaagccttcaaggcttgatgcatcttctaattagaactttgacattttattgacctttcttcagatcatagtcaaagt 12869967  T
Q  584 catcatagcttcttcttgattaccaaatgcattc----------aaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttat 673  Q
    | | | || ||| |||||| |||||||||| |||          | || ||||||| | ||||||||||||||||  ||||| ||||||| ||||| |||    
T  12869966 ccttagagattc-tcttgagtaccaaatgcgttcttttgcgtttagagtttggtgtctcagaaccaacaagttgacatcagattcagaatttaattatat 12869868  T
Q  674 gatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaac 740  Q
    | |||||||||  ||||||| | || ||||| | | || |||||||||||||| |||  ||||||||    
T  12869867 ggtcctgcacatctgaacactcatttgagtacctagttattctttcatacattgttataatcaaaac 12869801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 679 - 773
Target Start/End: Original strand, 14761285 - 14761378
Alignment:
Q  679 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    ||||||||||||||| ||||| |||| | ||||| | ||||||||||| ||| |||||||| |||||||| |||||||||||||||||| |||||    
T  14761285 tgcacacttgaacacacgttatagtaccaaattgct-tttcatacattgttatcatcaaaattttagagacattgttctaaaacccactatggtt 14761378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 33545933 - 33545969
Alignment:
Q  19 tagagagtggtaaactaacttaaagctcaatagactt 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  33545933 tagagagtggtaaactaacttaaagctcaatagactt 33545969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 513 - 693
Target Start/End: Original strand, 33546463 - 33546652
Alignment:
Q  513 ttcaaggcttgatgcatcttctaattagagctttgaattttgttgaactttcttcatatcatagttttagtcatcatagcttcttcttgattaccaaatg 612  Q
    |||||||||| ||||||||||| || |||||||| ||||||||| | |||||||    |||| | || |  ||||| |||||||| |||| || ||||||    
T  33546463 ttcaaggcttaatgcatcttctgatcagagctttaaattttgtttacctttcttgggttcattgcttcac-catcagagcttctttttgagtatcaaatg 33546561  T
Q  613 cattcaa----------agcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacac 693  Q
    |||||||          |||||||| ||| |||||||||||||||| |||||| ||| ||| |||||  ||| ||||||| ||||||||||    
T  33546562 cattcaattgtgtttagagcttggtatttcagaaccaacaagttgacttcagaatcaaaatttaattcaatggtcctgcagacttgaacac 33546652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 615 - 819
Target Start/End: Complemental strand, 23528503 - 23528299
Alignment:
Q  615 ttcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgtt 714  Q
    |||| |||||||||| | | |||||||||||||| |||||| ||| ||| |||||||||| ||||||||| |||| ||    ||| |||| |||||||||    
T  23528503 ttcagagcttggtgtatcaaaaccaacaagttgatttcagattcaaaatttaattttatggtcctgcaca-ttgagcaaaaattatagtacccaattgtt 23528405  T
Q  715 ctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcctcc-ttttcgatggttacaaacttatgtat 813  Q
    |||||| ||||| ||| ||||||||| ||||||| ||||||||||||| |||||||||| || |||||| ||| |||| |||| | | ||||||||||||    
T  23528404 ctttcagacattgttatcatcaaaaccttagagacattgttctaaaactcactttggttcaacaatctcttccttttttgatgatgagaaacttatgtat 23528305  T
Q  814 tttaaa 819  Q
     |||||    
T  23528304 cttaaa 23528299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 769
Target Start/End: Complemental strand, 4596944 - 4596840
Alignment:
Q  665 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 764  Q
    |||||||||| |  ||||||| ||||||| | ||||||||||||| | |||||| ||| ||||| | |||  |||||||| ||| ||| |||||||||||    
T  4596944 taattttatggttttgcacacctgaacacacattagagtatccaaatattcttttatatattatcatcatttaaactttaaagacattattctaaaaccc 4596845  T
Q  765 acttt 769  Q
    |||||    
T  4596844 acttt 4596840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 671 - 754
Target Start/End: Original strand, 9796540 - 9796623
Alignment:
Q  671 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    ||||||||||||||||||||||    |||   |||||||||||||||| |||| |||||| ||||||||||| ||||| |||||    
T  9796540 tatgatcctgcacacttgaacatatattaacatatccaattgttctttaatactttattatcatcaaaacttcagagaaattgt 9796623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 703 - 776
Target Start/End: Complemental strand, 9829006 - 9828934
Alignment:
Q  703 tatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaa 776  Q
    |||| ||||||||||| ||||||| ||| |||||||||||||| || ||||||| ||||| || ||||||||||    
T  9829006 tatctaattgttcttttatacattgttatcatcaaaactttagggacattgttc-aaaactcattttggttaaa 9828934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 697 - 765
Target Start/End: Original strand, 2906526 - 2906594
Alignment:
Q  697 ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 765  Q
    ||||||||||||||| |||||  ||||||| ||| ||||||||||||||||| ||| || |||| ||||    
T  2906526 ttagagtatccaattattcttctatacattgttatcatcaaaactttagagacattattgtaaatccca 2906594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 623 - 773
Target Start/End: Complemental strand, 11739676 - 11739526
Alignment:
Q  623 ttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcata 722  Q
    ||||||||| ||||||||||||| || ||| |||||||||| ||||| |||| | |||||| |||||| ||  ||||||||| | |||||||||||||||    
T  11739676 ttggtgtttcagaaccaacaagtagacttctgagtcagaatttaattctatggtactgcacgcttgaatacatgttagagtacctaattgttctttcata 11739577  T
Q  723 cattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
      || ||| ||||||||| ||||| | |||||||||||||||  |||||||    
T  11739576 tgttgttatcatcaaaacattagaaacattgttctaaaaccctttttggtt 11739526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 768
Target Start/End: Complemental strand, 39199872 - 39199758
Alignment:
Q  656 gtcagaatataattttatgatcctgcacacttgaacacgcg--ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattg 753  Q
    |||||||| ||||| |||| || |||| |||| |||||||   |||||||||| |||||||| |||||||||| |||  |||||||| |||||||||||     
T  39199872 gtcagaatttaattatatggtcatgcatacttaaacacgcacattagagtatcaaattgttcattcatacattgttattatcaaaaccttagagatatta 39199773  T
Q  754 ttctaaaacccactt 768  Q
    ||||||||| |||||    
T  39199772 ttctaaaactcactt 39199758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 762
Target Start/End: Original strand, 23662258 - 23662375
Alignment:
Q  645 ttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaacttta 744  Q
    |||| |||||||||||||| ||||| |||| ||||||| |||  ||||    |||| ||||||||||||||||| ||||||| | | ||||||||| |||    
T  23662258 ttgacttcagagtcagaatgtaattctatgttcctgcatactacaacaaaatttagggtatccaattgttcttttatacattgtcagcatcaaaacctta 23662357  T
Q  745 gagatattgttctaaaac 762  Q
    |||| ||| |||||||||    
T  23662358 gagacattattctaaaac 23662375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 698 - 765
Target Start/End: Original strand, 3316119 - 3316186
Alignment:
Q  698 tagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 765  Q
    ||||||| ||||||||||||  ||||||| ||| ||||||||| |||||||| |||||||||||||||    
T  3316119 tagagtacccaattgttcttctatacatttttatcatcaaaacattagagattttgttctaaaaccca 3316186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 655 - 770
Target Start/End: Original strand, 6414881 - 6414996
Alignment:
Q  655 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    ||||| ||| ||||| |||  |||||||||||||||  |   |||||||| |||||| |||||||||||||| ||| ||| |||| |||| ||| |||||    
T  6414881 agtcataatttaattatatcgtcctgcacacttgaatgcatattagagtacccaattattctttcatacattgttatcataaaaaatttaaagacattgt 6414980  T
Q  755 tctaaaacccactttg 770  Q
    |||| |||||||||||    
T  6414981 tctataacccactttg 6414996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 765
Target Start/End: Original strand, 23183444 - 23183554
Alignment:
Q  655 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    ||||| ||| ||||| |||| || ||||||||||||||| | ||||||| ||   ||||||||||||| ||||||| ||||| ||||| ||||| |||||    
T  23183444 agtcaaaatttaattatatggtcatgcacacttgaacacacattagagtgtcaggttgttctttcataaattattatcatcagaacttaagagacattgt 23183543  T
Q  755 tctaaaaccca 765  Q
     | ||||||||    
T  23183544 ccaaaaaccca 23183554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 700 - 765
Target Start/End: Complemental strand, 7681578 - 7681513
Alignment:
Q  700 gagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 765  Q
    ||||| ||| ||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  7681578 gagtacccagttgttcttctatacattgttatcatcaaaaccttagagatattgttctaaaaccca 7681513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 645 - 762
Target Start/End: Original strand, 23655457 - 23655574
Alignment:
Q  645 ttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaacttta 744  Q
    |||| |||||||||||||| ||||| |||| |||| |||||  |||||  | |||||||| |||||| |||||  ||||||  ||| ||||||||| |||    
T  23655457 ttgacttcagagtcagaatttaattatatggtcctacacaccagaacaaactttagagtacccaatttttcttatatacatagttaacatcaaaacctta 23655556  T
Q  745 gagatattgttctaaaac 762  Q
    |||| ||| |||||||||    
T  23655557 gagacattattctaaaac 23655574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 489
Target Start/End: Complemental strand, 11739986 - 11739878
Alignment:
Q  381 gtggtcagaagaagacaaacaatattgcagaacttgaaaagcgacatttctttagaagaagacaaaattgatcagcttccatcaaagtgttgaccaatga 480  Q
    ||||| ||||||||||| | |||||||||||| ||| ||||| || | ||||||||| || |||| | || ||||  ||||||||||||||||| | |||    
T  11739986 gtggttagaagaagacagataatattgcagaatttggaaagctacgtctctttagaaaaaaacaacaatggtcagagtccatcaaagtgttgacgattga 11739887  T
Q  481 catgtccat 489  Q
    | |||||||    
T  11739886 cgtgtccat 11739878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 700 - 765
Target Start/End: Complemental strand, 7666319 - 7666254
Alignment:
Q  700 gagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 765  Q
    ||||| ||| ||||||||  ||||||| ||| ||||||||  ||||||||||||||||||||||||    
T  7666319 gagtacccagttgttcttctatacattgttatcatcaaaaacttagagatattgttctaaaaccca 7666254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 738
Target Start/End: Original strand, 19650724 - 19650781
Alignment:
Q  681 cacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaa 738  Q
    ||||||||||||||| |||| ||| |||||| || ||||||||||||||| |||||||    
T  19650724 cacacttgaacacgcattagggtacccaatttttatttcatacattattatcatcaaa 19650781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 653 - 773
Target Start/End: Complemental strand, 7144683 - 7144564
Alignment:
Q  653 agagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatatt 752  Q
    ||||||||||| ||||| |||| | ||||| |||||||||| | ||    |||||||||||||||||||| ||| ||  ||||||||||| ||||  |||    
T  7144683 agagtcagaatttaattatatggttctgcatacttgaacacacattgtcatatccaattgttctttcatatattgttctcatcaaaacttcagagtcatt 7144584  T
Q  753 gttctaaaacccactttggtt 773  Q
    ||| |||||| || |||||||    
T  7144583 gtt-taaaactcattttggtt 7144564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 10677300 - 10677391
Alignment:
Q  319 ttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttg-----ttttgcacgtggtcagaagaagacaaacaatat 405  Q
    ||||||||| || ||||| || |||||||||||||||   |||||||  |||||     |||||||||||||| ||||||||||||||||||    
T  10677300 ttttgcttcattgggaatgatatgttgcattctattttcctttgaaattctttgtttgtttttgcacgtggtcggaagaagacaaacaatat 10677391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 762
Target Start/End: Complemental strand, 32561988 - 32561883
Alignment:
Q  655 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 754  Q
    ||||||||| ||||| |||| |||| || |||| ||||  | |||||||||  |||| || |||||||||| |||| ||||||||| ||||||| |||||    
T  32561988 agtcagaatttaattatatggtcctacatacttaaacatacattagagtattaaattatt-tttcatacat-attatcatcaaaaccttagagacattgt 32561891  T
Q  755 tctaaaac 762  Q
    ||||||||    
T  32561890 tctaaaac 32561883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 679 - 773
Target Start/End: Complemental strand, 1675102 - 1675008
Alignment:
Q  679 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    ||||||||||||||  |  |||| |||||||||||||||  ||||||||||| ||||||||  ||||    ||| ||||||||| ||||||||||    
T  1675102 tgcacacttgaacaaacaatagaatatccaattgttcttctatacattattatcatcaaaatcttagtagcattattctaaaactcactttggtt 1675008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 669 - 747
Target Start/End: Original strand, 1783369 - 1783447
Alignment:
Q  669 tttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagag 747  Q
    |||||||||||||||||||||||||   ||| | |||||||||||||||  | || || ||| |||||||||| |||||    
T  1783369 tttatgatcctgcacacttgaacacatattaaattatccaattgttcttcaaaactttgttatcatcaaaactctagag 1783447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 758
Target Start/End: Complemental strand, 4122671 - 4122590
Alignment:
Q  677 cctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 758  Q
    |||||||||| |||||| |||||  |||  ||||||||||||  |||||| ||| ||| ||||  |||||||||||||||||    
T  4122671 cctgcacactggaacacacgttattgtactcaattgttcttttctacattgttatcattaaaatcttagagatattgttcta 4122590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 773
Target Start/End: Complemental strand, 39227475 - 39227386
Alignment:
Q  684 acttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    |||||||||| | |||||||||| |  |||||||||||| ||| ||| | ||||||| ||||| | ||| |||||||| | |||||||||    
T  39227475 acttgaacacactttagagtatcaatctgttctttcatatattgttatcttcaaaaccttagaaacattattctaaaatcgactttggtt 39227386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 615 - 770
Target Start/End: Complemental strand, 35150261 - 35150106
Alignment:
Q  615 ttcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgtt 714  Q
    |||| |||||| ||||| ||||||||||| |||| ||   ||||||||| || ||||||| |  ||||| ||||||||| |  || ||||  ||||||||    
T  35150261 ttcagagcttgatgtttcagaaccaacaacttgactttgaagtcagaatttagttttatggtattgcacccttgaacacacactaaagtactcaattgtt 35150162  T
Q  715 ctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 770  Q
     ||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||    
T  35150161 atttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttg 35150106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 665 - 773
Target Start/End: Complemental strand, 24715758 - 24715650
Alignment:
Q  665 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 764  Q
    ||||| |||| || |||||| |||||||| | |||||||| ||||||||||||||||| ||| ||| ||||||||  ||| ||| |||| | ||||||||    
T  24715758 taattgtatggtcttgcacaattgaacacacattagagtacccaattgttctttcataaattgttatcatcaaaatcttaaagacattgatgtaaaaccc 24715659  T
Q  765 actttggtt 773  Q
    |||||||||    
T  24715658 actttggtt 24715650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 683 - 773
Target Start/End: Complemental strand, 12285854 - 12285764
Alignment:
Q  683 cacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    |||||||| || | |||||||| |||||||||||||| |||||| ||| |||||||| |||| ||| |||||| ||||| |||||||||||    
T  12285854 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaatccactttggtt 12285764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 294 - 403
Target Start/End: Complemental strand, 24716089 - 24715975
Alignment:
Q  294 tctgttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttgttt-----tgcacgtggtcag 388  Q
    ||||||||||| |||||||||  |||||| ||||||||||||| ||| |||| ||||| ||||  |||||||  ||||||||     |||||||||||||    
T  24716089 tctgttgaatattactagagggatcttttacttcttttggaatgatcagttgaattctctttgactttgaaattctttgtttatttctgcacgtggtcag 24715990  T
Q  389 aagaagacaaacaat 403  Q
    |||||||| ||||||    
T  24715989 aagaagacgaacaat 24715975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 761
Target Start/End: Original strand, 9736410 - 9736527
Alignment:
Q  644 gttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaacttt 743  Q
    |||||||||||||| ||||  ||||| |||| |||||  | ||||||||  | ||||  || | ||||||||||||||||||| ||| |||||||||| |    
T  9736410 gttgaattcagagttagaacttaattctatggtcctgaccccttgaacaaactttaggctacctaattgttctttcatacatttttatcatcaaaactgt 9736509  T
Q  744 agagatattgttctaaaa 761  Q
    ||||| ||||||||||||    
T  9736510 agagacattgttctaaaa 9736527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 665 - 740
Target Start/End: Complemental strand, 9883107 - 9883032
Alignment:
Q  665 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaac 740  Q
    |||||||||| |  ||||||||| |||||   ||||||||| |||||||||||||||||||| |||||||||||||    
T  9883107 taattttatggtagtgcacacttaaacacaaattagagtattcaattgttctttcatacatttttaccatcaaaac 9883032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 620 - 739
Target Start/End: Complemental strand, 19601627 - 19601508
Alignment:
Q  620 agcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttc 719  Q
    |||||| ||| |||||||||| || |||| || | | ||||||| ||||| |||||||||||| ||||||| ||  |||| | ||  ||||| ||| |||    
T  19601627 agcttgatgtattagaaccaaaaacttgattttaaattcagaatttaattatatgatcctgcatacttgaatacatgttacaatactcaattattcattc 19601528  T
Q  720 atacattattaccatcaaaa 739  Q
    ||||||||||| ||||||||    
T  19601527 atacattattatcatcaaaa 19601508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 702 - 773
Target Start/End: Original strand, 20748672 - 20748743
Alignment:
Q  702 gtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    ||||||||||||||||||||||||| ||| ||||  | | ||| ||| |||||||||| |||||||||||||    
T  20748672 gtatccaattgttctttcatacattgttatcatcgtatccttatagacattgttctaatacccactttggtt 20748743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 679 - 765
Target Start/End: Original strand, 7221262 - 7221347
Alignment:
Q  679 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 765  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||| ||| ||| ||||||||| ||||| ||||| || |||||||||    
T  7221262 tgcacacttgaacaaactttagagtatccaattgttattttata-atttttatcatcaaaaccttagaaatattattttaaaaccca 7221347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 9856021 - 9855971
Alignment:
Q  22 agagtggtaaactaacttaaagctcaatagacttaaaaacacttaagaaat 72  Q
    |||||||||||||||||||||| |||||||||||   ||||||||||||||    
T  9856021 agagtggtaaactaacttaaagttcaatagacttctcaacacttaagaaat 9855971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 17651796 - 17651761
Alignment:
Q  20 agagagtggtaaactaacttaaagctcaatagactt 55  Q
    ||||||||||||||||||||||||||||||| ||||    
T  17651796 agagagtggtaaactaacttaaagctcaataaactt 17651761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 726
Target Start/End: Original strand, 23692967 - 23693038
Alignment:
Q  655 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacatt 726  Q
    ||||||||| ||||| |||| || ||| | ||||||||| | |||||||| ||||||||| |||||||||||    
T  23692967 agtcagaatttaattatatggtcttgctcgcttgaacacacattagagtacccaattgttatttcatacatt 23693038  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 249 - 375
Target Start/End: Complemental strand, 1185954 - 1185828
Alignment:
Q  249 gagaagttttgaatagatttgaaagctctgcttctaatggatgactctgttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcat 348  Q
    ||||||||||||  || |||||||||| | | |||||||||| | |   |||||||||| |||||||||| ||| |||||||  |||| ||| |||| ||    
T  1185954 gagaagttttgaccagttttgaaagctttacatctaatggataatttcattgaatagtattagaggtttcattttcttctttgagaatgatccgttgtat 1185855  T
Q  349 tctatttggttttgaaaagctttgttt 375  Q
    ||| ||||  ||| |||| ||||||||    
T  1185854 tctctttgtctttcaaaaactttgttt 1185828  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 765
Target Start/End: Complemental strand, 16300733 - 16300692
Alignment:
Q  724 attattaccatcaaaactttagagatattgttctaaaaccca 765  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||    
T  16300733 attattatcatcaaaactttaaagacattgttctaaaaccca 16300692  T

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Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 710 - 776
Target Start/End: Complemental strand, 24559019 - 24558953
Alignment:
Q  710 ttgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaa 776  Q
    ||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||    
T  24559019 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaa 24558953  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 710 - 776
Target Start/End: Complemental strand, 24600051 - 24599985
Alignment:
Q  710 ttgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaa 776  Q
    ||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||    
T  24600051 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaa 24599985  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 683 - 773
Target Start/End: Complemental strand, 11848353 - 11848263
Alignment:
Q  683 cacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 773  Q
    ||||||||||| | ||| | || | ||||||||||||||||| | ||| ||||||||| ||||||| |||||| |||||||||||||||||    
T  11848353 cacttgaacacacattataataccaaattgttctttcatacaatgttatcatcaaaaccttagagacattgttgtaaaacccactttggtt 11848263  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 509 - 600
Target Start/End: Complemental strand, 15990843 - 15990752
Alignment:
Q  509 aatcttcaaggcttgatgcatcttctaattagagctttgaattttgttgaactttcttcatatcatagttttagtcatcatagcttcttctt 600  Q
    |||||||||||||||||||||||| | || | |  ||||| ||||||||  ||||| ||| ||||||||| ||||||||||||||| |||||    
T  15990843 aatcttcaaggcttgatgcatctttttatcaaatatttgacttttgttggcctttcatcagatcatagttctagtcatcatagctttttctt 15990752  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 739
Target Start/End: Original strand, 18807449 - 18807535
Alignment:
Q  653 agagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaa 739  Q
    ||||| ||||| ||||||||||||||| ||||||||||||| | ||||  |||||||||||| ||| |||  || ||| ||||||||    
T  18807449 agagttagaatttaattttatgatccttcacacttgaacacaccttagcatatccaattgttttttgatattttgttatcatcaaaa 18807535  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 723
Target Start/End: Complemental strand, 17771794 - 17771693
Alignment:
Q  622 cttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcat 721  Q
    |||||||||| | |||||| ||||||| |||| ||||| ||| ||||| ||| | | |  ||||||||| || | |||||||||| ||||||||||||||    
T  17771794 cttggtgtttcaaaaccaataagttgacttcaaagtcataatttaattatataaacttagacacttgaatacacattagagtatctaattgttctttcat 17771695  T
Q  722 ac 723  Q
    ||    
T  17771694 ac 17771693  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 15990943 - 15990892
Alignment:
Q  297 gttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcat 348  Q
    ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||    
T  15990943 gttgaatagaactagaggtttcctttgcttctttcgaaatgatctgttgcat 15990892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 724
Target Start/End: Complemental strand, 16687198 - 16687129
Alignment:
Q  655 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcataca 724  Q
    ||||| ||| ||||| |||| || ||||||||| ||||| | |||||||| |||||| ||||||||||||    
T  16687198 agtcataatttaattctatggtcttgcacacttaaacacacattagagtacccaattattctttcataca 16687129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 25954590 - 25954561
Alignment:
Q  418 aaagcgacatttctttagaagaagacaaaa 447  Q
    ||||||||||||||||||||||||||||||    
T  25954590 aaagcgacatttctttagaagaagacaaaa 25954561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 665 - 773
Target Start/End: Complemental strand, 4425 - 4317
Alignment:
Q  665 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 764  Q
    ||||| |||| ||||||||||| |||||  | |||||||||||||||||| ||| |||| || ||| ||||| ||   || ||| |||||||||||||||    
T  4425 taattatatggtcctgcacactcgaacatacattagagtatccaattgttattttatactttgttaacatcagaatcatatagacattgttctaaaaccc 4326  T
Q  765 actttggtt 773  Q
    |||||||||    
T  4325 actttggtt 4317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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