View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21590_high_2 (Length: 451)
Name: NF21590_high_2
Description: NF21590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21590_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 32275241 - 32275575
Alignment:
| Q |
1 |
tcatacgtttcagaaacagaaaacaataacttgaaggaataaacaaaattttgtctaagatctctatcaactgatttccacgacaacaaggttaaatgtg |
100 |
Q |
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| T |
32275241 |
tcatacgtttcagaaacagaaaacaataacttgaaggaataaacaaaattttgtctaacatctctatcaactgatttccacgacaacaaggttaaatgtg |
32275340 |
T |
|
| Q |
101 |
gaccacaaatgcaagtgggaacacttttagcaagagtagttatgatatgtttaccaaaaatgacattaaacttgaggaatcaaatataggaccaccaaca |
200 |
Q |
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| T |
32275341 |
gaccacaaatgcaagtgg------------caagagtagttatgatatgtttaccaaaaatgacattaaacttgaggaatcaaatataggaccaccaaca |
32275428 |
T |
|
| Q |
201 |
ttgttttccttgttatgttttatgatatcaaccaacttgtgcatggtgtgtggaaaaagctagcaagaaagtattgtcctaaattaactaatgaaattaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32275429 |
ttgttttccttgttatgttttatgatatcaaccaacttgtgcatggtgtgtggaaaaagctagcaagaaagtattgtcctaaattaactaatgaaattaa |
32275528 |
T |
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| Q |
301 |
tttcatacaaatcaatgcaaatattatttttatcataattcataagt |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32275529 |
tttcatacaaatcaatgcaaatattatttttatcataatttataagt |
32275575 |
T |
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