View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21590_high_3 (Length: 447)

Name: NF21590_high_3
Description: NF21590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21590_high_3
NF21590_high_3
[»] chr8 (1 HSPs)
chr8 (10-433)||(27294593-27295016)
[»] chr3 (36 HSPs)
chr3 (318-429)||(22034566-22034677)
chr3 (319-432)||(21937199-21937312)
chr3 (318-431)||(22115132-22115245)
chr3 (318-431)||(22187035-22187148)
chr3 (318-433)||(21945669-21945784)
chr3 (318-429)||(22028049-22028160)
chr3 (318-426)||(22179469-22179577)
chr3 (318-432)||(22052779-22052893)
chr3 (318-429)||(21930470-21930581)
chr3 (323-433)||(22104768-22104878)
chr3 (318-431)||(30989611-30989724)
chr3 (134-286)||(30987770-30987922)
chr3 (318-429)||(22615565-22615676)
chr3 (318-429)||(22621220-22621331)
chr3 (352-429)||(18967325-18967402)
chr3 (321-426)||(22208072-22208177)
chr3 (318-429)||(22657372-22657483)
chr3 (374-423)||(22436996-22437045)
chr3 (324-429)||(22648470-22648575)
chr3 (372-420)||(22635863-22635911)
chr3 (32-241)||(21939032-21939241)
chr3 (372-420)||(22368272-22368320)
chr3 (368-426)||(2749082-2749140)
chr3 (374-431)||(2807349-2807406)
chr3 (46-87)||(22036562-22036603)
chr3 (46-87)||(22117130-22117171)
chr3 (319-420)||(22431459-22431560)
chr3 (370-426)||(2818644-2818700)
chr3 (189-241)||(21932309-21932361)
chr3 (47-87)||(21947672-21947712)
chr3 (189-241)||(22029892-22029944)
chr3 (47-87)||(22106756-22106796)
chr3 (189-241)||(22188880-22188932)
chr3 (372-420)||(22358362-22358410)
chr3 (372-420)||(22468308-22468356)
chr3 (372-420)||(22632225-22632273)
[»] chr1 (3 HSPs)
chr1 (318-417)||(34975443-34975542)
chr1 (318-429)||(34980211-34980322)
chr1 (318-417)||(34989278-34989377)


Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 433
Target Start/End: Complemental strand, 27295016 - 27294593
Alignment:
Q  10 gcacagattcaataggcataagccaaatatgaagaacttcaagcttctctatgtgttggatgccagtcggtatattctcaaatcggggaattgagcctaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  27295016 gcacagattcaataggcataagccaaatatgaagaacttcaagcttctctatgtgttggatgccagtcggtacattctcaagtcggggaattgagcctaa 27294917  T
Q  110 ctgaagctttttcagataatgcaatgctcctttgtcgataataatatatctcaattccatcgagaatccaacgtacagctcctttagtctctgaatccct 209  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27294916 ctgaagctttttcagataaggcaatgctccttcgtcgataataatatatctcaattccatcgagaatccaacgtacagctcctttagtctctgaatccct 27294817  T
Q  210 ccatcttgaaaatacaaacctaaaccttcataagctccagagtctatagaaaggatcaacaagtgttgcaaacttttatacacgatagtcaaggtgatgg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27294816 ccatcttgaaaatacaaacctaaaccttcataagctccagagtctatagaaaggatcaacaagtgttgcaaacttttatacacgatagtcaaggtgatgg 27294717  T
Q  310 aagagtctattgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27294716 aagagtctattgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgt 27294617  T
Q  410 cctcccattcctaccacagaaact 433  Q
    ||||||||||||||||||||||||    
T  27294616 cctcccattcctaccacagaaact 27294593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 22034677 - 22034566
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    ||||||||||||| |||||||||||||| |||| |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22034677 attgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22034578  T
Q  418 tcctaccacaga 429  Q
    ||||||||||||    
T  22034577 tcctaccacaga 22034566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 319 - 432
Target Start/End: Complemental strand, 21937312 - 21937199
Alignment:
Q  319 ttgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccatt 418  Q
    ||||||||||||||||||||||||| | |||| |||||| | ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  21937312 ttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctcccatt 21937213  T
Q  419 cctaccacagaaac 432  Q
    ||||||||||||||    
T  21937212 cctaccacagaaac 21937199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 318 - 431
Target Start/End: Complemental strand, 22115245 - 22115132
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    |||||||||||||||||||||||||| | |||| |||||| |||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  22115245 attgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctcccat 22115146  T
Q  418 tcctaccacagaaa 431  Q
    ||||||||||||||    
T  22115145 tcctaccacagaaa 22115132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 318 - 431
Target Start/End: Complemental strand, 22187148 - 22187035
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    ||||||||||||| |||||||||||| | |||| |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22187148 attgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22187049  T
Q  418 tcctaccacagaaa 431  Q
    ||||||||||||||    
T  22187048 tcctaccacagaaa 22187035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 318 - 433
Target Start/End: Complemental strand, 21945784 - 21945669
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    |||||||||| |||||||||||| || | |||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21945784 attgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctcccat 21945685  T
Q  418 tcctaccacagaaact 433  Q
    ||||||||| ||||||    
T  21945684 tcctaccacggaaact 21945669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 22028160 - 22028049
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    ||||||||||||| |||||||||||| | |||| |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22028160 attgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22028061  T
Q  418 tcctaccacaga 429  Q
    ||||||||||||    
T  22028060 tcctaccacaga 22028049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 318 - 426
Target Start/End: Complemental strand, 22179577 - 22179469
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    ||||||||||||| |||||||||||| | |||| |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22179577 attgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22179478  T
Q  418 tcctaccac 426  Q
    ||| |||||    
T  22179477 tcccaccac 22179469  T

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Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 318 - 432
Target Start/End: Complemental strand, 22052893 - 22052779
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    ||||||||||||| |||||||| ||| | ||||  ||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22052893 attgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22052794  T
Q  418 tcctaccacagaaac 432  Q
    |||||||| ||||||    
T  22052793 tcctaccagagaaac 22052779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 21930581 - 21930470
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    |||||||||||||||||||||| ||  | | ||  ||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  21930581 attgagacactgtgatccatactcggaaatgaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 21930482  T
Q  418 tcctaccacaga 429  Q
    ||||||||||||    
T  21930481 tcctaccacaga 21930470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 323 - 433
Target Start/End: Complemental strand, 22104878 - 22104768
Alignment:
Q  323 gacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattccta 422  Q
    |||||||||||||| ||| || | |||| |||||| || ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  22104878 gacactgtgatccaaacatgacaatcaaagtgtccaattacatccttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattccta 22104779  T
Q  423 ccacagaaact 433  Q
    |||| ||||||    
T  22104778 ccaccgaaact 22104768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 431
Target Start/End: Original strand, 30989611 - 30989724
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    ||||||||||| |||||||||||||| | |||| |||||| ||||||| | || ||||||||||||||||    ||||||||||| ||||||||||||||    
T  30989611 attgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccctcccat 30989710  T
Q  418 tcctaccacagaaa 431  Q
     ||||| |||||||    
T  30989711 gcctactacagaaa 30989724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 286
Target Start/End: Original strand, 30987770 - 30987922
Alignment:
Q  134 tgctcctttgtcgataataatatatctcaattccatcgagaatccaacgtacagctcctttagtctctgaatccctccatcttgaaaatacaaacctaaa 233  Q
    ||||||||||||||||||||||| | |||||||   |||  |||||| |||||| || |||||| || ||| || ||||||||||||||||| |  | ||    
T  30987770 tgctcctttgtcgataataatatctgtcaattcatccgaagatccaatgtacagttcttttagtttcggaaaccatccatcttgaaaatacatatgtgaa 30987869  T
Q  234 ccttcataagctccagagtctatagaaaggatcaacaagtgttgcaaactttt 286  Q
    ||| ||||||| |||  | ||||||| |||||||| |||||||||||||||||    
T  30987870 cctccataagcaccaacgcctatagagaggatcaataagtgttgcaaactttt 30987922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 22615565 - 22615676
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    |||||||||||||||||||||||||| | |||| ||||||    || |||||||| |||||||| |||||| | ||||||||||| || |||||||||||    
T  22615565 attgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccat 22615664  T
Q  418 tcctaccacaga 429  Q
    ||| ||||||||    
T  22615665 tcccaccacaga 22615676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 22621220 - 22621331
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    |||| |||||||||| |||||||||||| || | |||||| ||||| || |||||||| ||||| || ||| | ||||||| ||||||||| ||||||||    
T  22621220 attgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccat 22621319  T
Q  418 tcctaccacaga 429  Q
    ||||||||||||    
T  22621320 tcctaccacaga 22621331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 18967325 - 18967402
Alignment:
Q  352 gtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcctaccacaga 429  Q
    |||||| |||||||||||| ||||| ||||| ||||  ||||||| ||||||||||||||||||||||||||||||||    
T  18967325 gtgtccaatgacatccttgttgtcagaaactctctttgctagagttgtttttccttgccctcccattcctaccacaga 18967402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 426
Target Start/End: Complemental strand, 22208177 - 22208072
Alignment:
Q  321 gagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 420  Q
    ||||||||||||||||||||||| | |||| || ||| || || || |||||||||||||||| |||| | ||||| ||||| |||||||||||||| ||    
T  22208177 gagacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatccc 22208078  T
Q  421 taccac 426  Q
     |||||    
T  22208077 aaccac 22208072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 22657372 - 22657483
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    |||| |||||||||||||| |||||| | |||| |||||| |  || || ||||||||||||||||| ||  | ||||| ||||||||||||||||||||    
T  22657372 attgtgacactgtgatccaaacacgacattcaaagtgtccaacaacctctttgctgtcaaaaacttttttagcaagagtagtttttccttgccctcccat 22657471  T
Q  418 tcctaccacaga 429  Q
    ||| || |||||    
T  22657472 tcccacgacaga 22657483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 22436996 - 22437045
Alignment:
Q  374 tcaaaaactttcttgactagagtggtttttccttgccctcccattcctac 423  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  22436996 tcaaaaactttcttggccagagtagtttttccttgccctcccattcctac 22437045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 429
Target Start/End: Original strand, 22648470 - 22648575
Alignment:
Q  324 acactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcctac 423  Q
    ||||| |||||||||||||| | |||| ||||||    || || ||||||||||| |||||  || | ||||||||||||||| |||||||||| |||||    
T  22648470 acactttgatccatacacgaaattcaaagtgtcccgctacctctttgctgtcaaacacttttctggcaagagtggtttttcctagccctcccatacctac 22648569  T
Q  424 cacaga 429  Q
    ||||||    
T  22648570 cacaga 22648575  T

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Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 22635863 - 22635911
Alignment:
Q  372 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 420  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  22635863 tgtcaaaaactttcttcgctagagtggtttttccttgtcctcccattcc 22635911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 21939241 - 21939032
Alignment:
Q  32 ccaaatatgaagaacttcaagcttctctatgtgttggatgccagtcggtatattct-caaatcggggaattgagcctaactgaagctttttcagataatg 130  Q
    ||||||||  ||| ||||||||||||||| |||||  |||||||| |||||||||| || || | ||  |||  | ||||| ||||||||| ||  || |    
T  21939241 ccaaatatagagatcttcaagcttctctaagtgttcaatgccagtaggtatattcttcagattgaggggttgcac-taacttaagcttttttagggaagg 21939143  T
Q  131 caatgctcctttgtcgataataatatatctcaattccatcgagaatccaacgtacagctcctttagtctctgaatccctccatcttgaaaatacaaacct 230  Q
    || || |||||||||||||||||| |   ||||||| ||  |   || ||| | ||| ||||||||| |||||| | ||||||| ||||||| |||||||    
T  21939142 cattgatcctttgtcgataataatttccttcaattcaatgcaacctctaacttccagttcctttagtttctgaaactctccatcatgaaaatgcaaacct 21939043  T
Q  231 aaaccttcata 241  Q
    |||||||||||    
T  21939042 aaaccttcata 21939032  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 22368272 - 22368320
Alignment:
Q  372 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 420  Q
    ||||||||||||||||| ||||||||||||||||  | |||||||||||    
T  22368272 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattcc 22368320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 2749140 - 2749082
Alignment:
Q  368 ttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcctaccac 426  Q
    ||||| |||||||||  |||| | ||||||||||||||| | |||||||||||||||||    
T  2749140 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac 2749082  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 2807406 - 2807349
Alignment:
Q  374 tcaaaaactttcttgactagagtggtttttccttgccctcccattcctaccacagaaa 431  Q
    |||||||||  |||| | ||||||||||||||| | ||||||||||||||||| ||||    
T  2807406 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaa 2807349  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 22036603 - 22036562
Alignment:
Q  46 cttcaagcttctctatgtgttggatgccagtcggtatattct 87  Q
    ||||||||||||| | ||||||||||||||| ||||||||||    
T  22036603 cttcaagcttctccaagtgttggatgccagtgggtatattct 22036562  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 22117171 - 22117130
Alignment:
Q  46 cttcaagcttctctatgtgttggatgccagtcggtatattct 87  Q
    ||||||||||||| | ||||||||||||||| ||||||||||    
T  22117171 cttcaagcttctccaagtgttggatgccagtgggtatattct 22117130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 420
Target Start/End: Original strand, 22431459 - 22431560
Alignment:
Q  319 ttgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccatt 418  Q
    |||||||||||||||||||| |||| | |||| ||||   | |||    ||| |||||||||||||||||  |||||||||||||||  | |||||||||    
T  22431459 ttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccatt 22431558  T
Q  419 cc 420  Q
    ||    
T  22431559 cc 22431560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 2818700 - 2818644
Alignment:
Q  370 gctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcctaccac 426  Q
    |||||||||||||  |||| | ||||||||||||||| | || ||||||||||||||    
T  2818700 gctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccac 2818644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 21932361 - 21932309
Alignment:
Q  189 tcctttagtctctgaatccctccatcttgaaaatacaaacctaaaccttcata 241  Q
    ||||||||| |||||| ||||||||||||||||| |||   ||||||||||||    
T  21932361 tcctttagtttctgaaaccctccatcttgaaaatgcaattgtaaaccttcata 21932309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 21947712 - 21947672
Alignment:
Q  47 ttcaagcttctctatgtgttggatgccagtcggtatattct 87  Q
    |||||||||||| | ||||||||||||||| ||||||||||    
T  21947712 ttcaagcttctccaagtgttggatgccagtgggtatattct 21947672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 22029944 - 22029892
Alignment:
Q  189 tcctttagtctctgaatccctccatcttgaaaatacaaacctaaaccttcata 241  Q
    ||||||||| |||||| ||||||||||||||||| |||   ||||||||||||    
T  22029944 tcctttagtttctgaaaccctccatcttgaaaatgcaattgtaaaccttcata 22029892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 22106796 - 22106756
Alignment:
Q  47 ttcaagcttctctatgtgttggatgccagtcggtatattct 87  Q
    |||||||||||| | ||||||||||||||| ||||||||||    
T  22106796 ttcaagcttctccaagtgttggatgccagtgggtatattct 22106756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 22188932 - 22188880
Alignment:
Q  189 tcctttagtctctgaatccctccatcttgaaaatacaaacctaaaccttcata 241  Q
    ||||||||| |||||| ||||||||||||||||| |||   ||||||||||||    
T  22188932 tcctttagtttctgaaaccctccatcttgaaaatgcaattgtaaaccttcata 22188880  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 22358362 - 22358410
Alignment:
Q  372 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 420  Q
    ||||||||||||||||  ||||||||||||||||  | |||||||||||    
T  22358362 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 22358410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 22468308 - 22468356
Alignment:
Q  372 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 420  Q
    ||||||||||||||||| ||| ||||||||||||  | |||||||||||    
T  22468308 tgtcaaaaactttcttggctatagtggtttttcccagtcctcccattcc 22468356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 22632225 - 22632273
Alignment:
Q  372 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 420  Q
    ||||||||||||||||| ||||||||||||| ||  | |||||||||||    
T  22632225 tgtcaaaaactttcttggctagagtggttttccccagtcctcccattcc 22632273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 417
Target Start/End: Complemental strand, 34975542 - 34975443
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    |||| ||||||||||||||||||||| | |||| |||||| |  || || ||||| |||||||| || ||  | ||||||||||||||||||||||||||    
T  34975542 attgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccat 34975443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 34980322 - 34980211
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    |||| ||||||||||||||||||||| | |||| |||||| |  || || ||||| ||||||||||| ||  | |||||  |||||||||||||||||||    
T  34980322 attgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacttttttagcaagagttatttttccttgccctcccat 34980223  T
Q  418 tcctaccacaga 429  Q
    ||| || |||||    
T  34980222 tccaactacaga 34980211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 417
Target Start/End: Complemental strand, 34989377 - 34989278
Alignment:
Q  318 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 417  Q
    |||| ||||||||||||||||||||| | |||| |||||| |  || || ||||| |||||||| || ||  | ||||||||||||||||||||||||||    
T  34989377 attgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccat 34989278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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