View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21590_high_5 (Length: 317)
Name: NF21590_high_5
Description: NF21590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21590_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 6476204 - 6476490
Alignment:
| Q |
12 |
atgagaaacaaacgtagtaaaatccagctattgttaacccacagtcagttccgacattcacgaaatactgctccttccatctctgaaacaaagaacataa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6476204 |
atgagaaacaaacgtagtaaaatccagctattgttaacccacagtcagttccgacattcacgaaatactgctccttccatctctgaaacaaagaacataa |
6476303 |
T |
|
| Q |
112 |
tggaaatgttagtgtttacatttcagataaaataaagtcttttaatattttaagttttgtattggtgaaaatcaatttaccatgaatatgtaaggatagt |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6476304 |
tgcaaatgttagtgtttacatttcagataaaataaagtcttttaatattttaagttttgtattggtgaaaatcaatttaccatgaatatgtaaggatagt |
6476403 |
T |
|
| Q |
212 |
tgcttaggtccacagacttgccaccatctacctctacttggctctggaaaaatgaaatgcattagaaacattacatctggggatgaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6476404 |
tgcttaggtccacagacttgccaccatctacctctacttggctctggaaaaatgaaatgcattagaaacattacatctagggatgaa |
6476490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University