View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21590_low_4 (Length: 341)

Name: NF21590_low_4
Description: NF21590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21590_low_4
NF21590_low_4
[»] chr4 (3 HSPs)
chr4 (79-202)||(12210709-12210832)
chr4 (216-333)||(12210303-12210429)
chr4 (154-202)||(31689417-31689465)
[»] chr3 (3 HSPs)
chr3 (79-202)||(17618850-17618973)
chr3 (220-333)||(17618442-17618564)
chr3 (132-202)||(29032567-29032637)
[»] chr8 (2 HSPs)
chr8 (81-202)||(16101758-16101879)
chr8 (216-333)||(16102162-16102288)
[»] chr7 (2 HSPs)
chr7 (76-178)||(5997329-5997427)
chr7 (277-333)||(5996628-5996683)
[»] chr1 (3 HSPs)
chr1 (76-178)||(42031409-42031507)
chr1 (84-178)||(42027154-42027244)
chr1 (277-333)||(42030705-42030760)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 12210709 - 12210832
Alignment:
Q  79 tgtgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattcatga 178  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  12210709 tgtgtttttgggatttagggttttagctatttctcagtaaaacagatatcgaaaacatgattaagagaagaggtcgaatataaattaagaagattcatga 12210808  T
Q  179 gaagtaagcacaacatggaaggaa 202  Q
    |||| |||||||||||||||||||    
T  12210809 gaagcaagcacaacatggaaggaa 12210832  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 216 - 333
Target Start/End: Complemental strand, 12210429 - 12210303
Alignment:
Q  216 tttagcaaggccattgttgtttttcgtttcggctatcttattggagttttgtggtttcgggtgtttg---------tattcggtgttccgtcgatatgcg 306  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||         ||||||||||||||||||||||||    
T  12210429 tttagcaaggccattgttgtttttggtttcggctaccttattggagttttgtggttttgggtgtttgtattgtttgtattcggtgttccgtcgatatgcg 12210330  T
Q  307 gcacctgtttatttgtattgatgatgt 333  Q
    |||||||||||||||||||||||||||    
T  12210329 gcacctgtttatttgtattgatgatgt 12210303  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 31689465 - 31689417
Alignment:
Q  154 gaatataaattaagaagattcatgagaagtaagcacaacatggaaggaa 202  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  31689465 gaatataaattaagaagattcatgagaatcaagcacaacatggaaggaa 31689417  T

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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 17618850 - 17618973
Alignment:
Q  79 tgtgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattcatga 178  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  17618850 tgtgtttttggaatttagggttttagctgtttctcagtaaaacaaatatcgaaaacatgattaagagaagaggtcgaatataaattaagaagattcatga 17618949  T
Q  179 gaagtaagcacaacatggaaggaa 202  Q
    |||| |||||||||||||||||||    
T  17618950 gaagcaagcacaacatggaaggaa 17618973  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 333
Target Start/End: Complemental strand, 17618564 - 17618442
Alignment:
Q  220 gcaaggccattgttgtttttcgtttcggctatcttattggagttttgtggtttcgggtgtttg---------tattcggtgttccgtcgatatgcggcac 310  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||         ||||||||||||| ||||||||||||||    
T  17618564 gcaaggccattgttgtttttggtttcggctaccttattggagttttgtggtttcaggtgtttgtattgtttgtattcggtgttccatcgatatgcggcac 17618465  T
Q  311 ctgtttatttgtattgatgatgt 333  Q
    |||||||||||||||||||||||    
T  17618464 ctgtttatttgtattgatgatgt 17618442  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 29032567 - 29032637
Alignment:
Q  132 aacaagattaagagaaaaggtcgaatataaattaagaagattcatgagaagtaagcacaacatggaaggaa 202  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29032567 aacatgattaagagaagaggtcgaatataaattaagaagattcatgagaagcaagcacaacatggaaggaa 29032637  T

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Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 16101879 - 16101758
Alignment:
Q  81 tgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattcatgaga 180  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  16101879 tgtttttgggatttagggttttagttgtttctcagtaaaacagatatcgaaaacatgattaagagaagaggtagaatataaattaagaagattcatgaga 16101780  T
Q  181 agtaagcacaacatggaaggaa 202  Q
    || || ||||||||||||||||    
T  16101779 agcaatcacaacatggaaggaa 16101758  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 333
Target Start/End: Original strand, 16102162 - 16102288
Alignment:
Q  216 tttagcaaggccattgttgtttttcgtttcggctatcttattggagttttgtggtttcgggtgtt---------tgtattcggtgttccgtcgatatgcg 306  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||  |||||| |||||||         ||||||||||||||||||||||||||    
T  16102162 tttagcaaggccattgttgtttttggtttcggctaccttattggagtttaatggtttagggtgtttgtattgtttgtattcggtgttccgtcgatatgcg 16102261  T
Q  307 gcacctgtttatttgtattgatgatgt 333  Q
    |||||||||||||||||||||||||||    
T  16102262 gcacctgtttatttgtattgatgatgt 16102288  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 5997329 - 5997427
Alignment:
Q  76 ttatgtgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattca 175  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||    ||||| ||||||||||    
T  5997329 ttatgtgtttttgggatttagggttttagctgtttctctgtaaaacagatatcgaaaacatgattgagagaagaggtcga----aaattcagaagattca 5997424  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 5996683 - 5996628
Alignment:
Q  277 tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 333  Q
    |||||||||| ||||||||||| ||||| |||||||  || ||||||||||||||||    
T  5996683 tgtttgtatttggtgttccgtctatatgaggcacct-attgtttgtattgatgatgt 5996628  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 42031409 - 42031507
Alignment:
Q  76 ttatgtgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattca 175  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| || |||||||| |||||||    ||||| ||||||||||    
T  42031409 ttatgtgtttttgggatttagggttttagctgtttctctataaaacagatatcgaaaacatgactaagagaagaggtcga----aaattcagaagattca 42031504  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 42027244 - 42027154
Alignment:
Q  84 ttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattcatga 178  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||||| || |||||||| |||||||    ||||| |||||||||||||    
T  42027244 ttttgggatttagggttttagctgtttctctataaaacagatatcgaaaacatgactaagagaagaggtcga----aaattcagaagattcatga 42027154  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 42030760 - 42030705
Alignment:
Q  277 tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 333  Q
    |||||||||| ||||||||||| |||||||||||||  || ||||||||||||||||    
T  42030760 tgtttgtatttggtgttccgtctatatgcggcacct-attgtttgtattgatgatgt 42030705  T

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