View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21590_low_6 (Length: 294)
Name: NF21590_low_6
Description: NF21590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21590_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 3133832 - 3133553
Alignment:
| Q |
1 |
ggaggtttctaccatcaaccaccaccacttttttcttggggactatgttctctgctcatttttctcttcctccatacaccaccttaaacggcacgcattc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3133832 |
ggaggtttctaccatcaactaccaccacttttttcttggggactatgttctctgctcatttttctcttcctccatacaccaccttaaacggcacgcattc |
3133733 |
T |
|
| Q |
101 |
ccaattttccatgtacaaactgtgtatcaataaacattatttttcaagttaaatagtagtaccattttgtcaacaacaaaagttaaatagtatc-----n |
195 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3133732 |
ccaattttccatgtacaaactgtgtatcaataaacattatttttcaagttaaatagtagtaccattttgtcaacaacaaaagttaaatagtatctttttt |
3133633 |
T |
|
| Q |
196 |
nnnnnnnnnnctttcataagaagttaaattgtacattatttttctttccaagtaaaataattaaatcaagcagcttgtgt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3133632 |
ttttttttttctttcataagaagttaaattgtacattatttttctttccaagtaaaataattaaatcaagcagcttgtgt |
3133553 |
T |
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