View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21590_low_7 (Length: 281)
Name: NF21590_low_7
Description: NF21590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21590_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 26542028 - 26541791
Alignment:
| Q |
17 |
tgaaatgaagctaacattgtttgttatatactcttgcagagtccaatgttcaaattttatgatcccaagacacccattttcacatctccaggattcttac |
116 |
Q |
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| T |
26542028 |
tgaaatgaagctaacattgtttgttatatactcttgcagagtccaatgttcaaattttatgatcccaagacacccattttcacatctccaggattcttac |
26541929 |
T |
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| Q |
117 |
caccaacaaagattgataaatgcagggtataactatgatcatctgtcttcaaagttttaacttacatcttcgttttcattagacgtcttgcttaccatgt |
216 |
Q |
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| T |
26541928 |
caccaacaaagattgataaatgcagggtataactatgatcatctgtcttcaaagttttaacttacatcttcgttttcattagacgtcttgcttaccatgt |
26541829 |
T |
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| Q |
217 |
ttgagttgctcttttgtagattgtggatgcaataatct |
254 |
Q |
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| T |
26541828 |
ttgagttgctcttttgtagattgtggatgcaataatct |
26541791 |
T |
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Back To:
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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 8391285 - 8391464
Alignment:
| Q |
72 |
tttatgatcccaagacacccattttcacatctccaggattcttaccaccaacaaagattgataaatgcagggtataactatgatcatctgtcttcaaagt |
171 |
Q |
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| T |
8391285 |
tttaggatcccaagacacccattttcatatgtctaagattcttaccaccaacagagatcgataaatgcaggatatgactatgatcatctatcttcgaagt |
8391384 |
T |
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| Q |
172 |
tttaacttacatcttcgttttcattagacgtcttgcttaccatgtttgagttgctcttttgtagattgtggatgcaataatct |
254 |
Q |
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| T |
8391385 |
tcaatcttaccccttc-atttcattagatatcttgcttaccaagtttgagtt--tctcttatagattgtggatgcaataatct |
8391464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 54644597 - 54644523
Alignment:
| Q |
71 |
ttttatgatcccaagacacccattttcacatctccaggattcttaccaccaacaaagattgataaatgcagggta |
145 |
Q |
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| T |
54644597 |
ttttatgatcccaagacacccattttcacatctcctggattcctaccaccaacaaagattgacaactgccgggta |
54644523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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