View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21590_low_8 (Length: 268)
Name: NF21590_low_8
Description: NF21590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21590_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 3134087 - 3133831
Alignment:
| Q |
2 |
gtcgagtgagatgaaagtgacatatgattaaaagattaacatcatggccctatgggtatgatatataacttcatttggtgtatcttttttccttagtaca |
101 |
Q |
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| T |
3134087 |
gtcgggtgaaatgaaagtgacatatgattcaaagattaacatcatggccctatgggtatgatatataacttcatttggtgtatcttttttccttagtaca |
3133988 |
T |
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| Q |
102 |
ttatttgttgtctttaattaaggtgggacttaataaatgtgggaccacatgcctttttattttctatatcatgatgtagcatcccactagaaaatagaaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3133987 |
ttatttgttgtctttaattaaggtgggacttaataaatgtgggaccacatgcctttttattttctatatcatgatgtagtatcccactagaaaatagaaa |
3133888 |
T |
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| Q |
202 |
tagaatactgatagaagaggacatgactatatagctgtgaatctgtgatggtgatgg |
258 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3133887 |
tagaatagtgatagaagaggacatgactatatagctgtgaatctgtgatggtgatgg |
3133831 |
T |
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