View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21591_low_3 (Length: 297)
Name: NF21591_low_3
Description: NF21591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21591_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 31638619 - 31638342
Alignment:
| Q |
1 |
taatagttaattcatattttctttgagtcgtggttttaaaatgtcaaatacttggaatactatttgctaattgcaggtgatgaaggtggcatggctcatt |
100 |
Q |
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| T |
31638619 |
taatagttaattcatattttctttgacttgtggttttaaaatgtcaaatacttggaatactatttgctaatttcaggtgatgaaggtggcatggctcatt |
31638520 |
T |
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| Q |
101 |
agttctaacaaaaaagtacaaaatgaatcaaggagaagagtcaagtcgttcgatatatcactatctctagtaagagtatagttttggaattaataggttt |
200 |
Q |
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| T |
31638519 |
agttctaacaaaaaagtacaaaatgaatcaaggagaagagtcaagtcgttcgatatatcactatcactagtaagagtatagttttggaattaataggttt |
31638420 |
T |
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| Q |
201 |
ttctctaaactcagcacaagatatgcaggaaaagaaaaagaagcattttctttcttgttcaacagcgatgtatctgct |
278 |
Q |
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| T |
31638419 |
ttctctaaactcagcacaagatatgcaggaaaagaaaaagaagcattttctttcttgttcaacagcgatgtatctgct |
31638342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31671066 - 31671156
Alignment:
| Q |
1 |
taatagttaattcatattttctttgagtcgtggttttaaaatgtcaaatacttggaatactatttgctaattgcaggtgatgaaggtggcat |
92 |
Q |
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|||||||||||| ||| || ||||| | |||| ||||||||| |||||||||||| |||||||||||||||||| ||||| |||||||||| |
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| T |
31671066 |
taatagttaattaataaattttttgact-gtggatttaaaatgccaaatacttggattactatttgctaattgcaagtgataaaggtggcat |
31671156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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