View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21591_low_5 (Length: 286)
Name: NF21591_low_5
Description: NF21591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21591_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 3086852 - 3086597
Alignment:
| Q |
18 |
aacaaacttgtaacaagcataaaaaagtgaattataaattatcttccatacaaacctggatttggcaaaggagcagaagttgcagaagtaagttggtaga |
117 |
Q |
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||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3086852 |
aacaaacttgtaacaagaataaaaaagtgagtcaaaaattatcttccatacaaacctggatttggcaaaggagcagaagttgcagaagtaagttggtaga |
3086753 |
T |
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| Q |
118 |
acataaaatcatcatacttcatcaaacaacttggagcaagaacctgccaaccaatctttgtcccacagcatttaggaactttgtccaacatagcttccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3086752 |
acataaaatcatcatacttcatcaaacaacttggagcaagaacctgccaaccaatctttgtcccacagcatttaggaactttgtccaacatagcttccaa |
3086653 |
T |
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| Q |
218 |
acattgattacattgtttttcattaaggtccctactacactgcaccaatccatatc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3086652 |
acattgattacattgtttttcattaaggtccctactacactgcaccaatccatatc |
3086597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 103 - 273
Target Start/End: Original strand, 4551715 - 4551885
Alignment:
| Q |
103 |
aagtaagttggtagaacataaaatcatcatacttcatcaaacaacttggagcaagaacctgccaaccaatctttgtcccacagcatttaggaactttgtc |
202 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4551715 |
aagtaagctggtagaacataaaatcatcatactttatcaaacaacttggagcaagaacctgccaaccaatctttgtcccacagcatttaggaactttgtc |
4551814 |
T |
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| Q |
203 |
caacatagcttccaaacattgattacattgtttttcattaaggtccctactacactgcaccaatccatatc |
273 |
Q |
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| T |
4551815 |
taacatagccaccaaacattgattacattgattttcattaaggtccctactgcactgcaccaatccatatc |
4551885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 71 - 273
Target Start/End: Complemental strand, 3076918 - 3076716
Alignment:
| Q |
71 |
acctggatttggcaaaggagcagaagttgcagaagtaagttggtagaacataaaatcatcatacttcatcaaacaacttggagcaagaacctgccaacca |
170 |
Q |
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||||| ||| |||||||||| ||||||| | || |||| | |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |
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| T |
3076918 |
acctgaattaggcaaaggaggagaagtttgaaaaataagcttgtagaacataaaatcatcatactttatcaaacaacttggagcaacaacttgccaacca |
3076819 |
T |
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| Q |
171 |
atctttgtcccacagcatttaggaactttgtccaacatagcttccaaacattgattacattgtttttcattaaggtccctactacactgcaccaatccat |
270 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| |
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| T |
3076818 |
atctttgtcccacaacatttaggaactttgtctaacatagcctccaaacattgattacattgcttgtcactaaggtccctactacactgcaccaatccat |
3076719 |
T |
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| Q |
271 |
atc |
273 |
Q |
| |
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||| |
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| T |
3076718 |
atc |
3076716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 4551665 - 4551709
Alignment:
| Q |
38 |
aaaaaagtgaattataaattatcttccatacaaacctggatttgg |
82 |
Q |
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|||||||||||| ||||||||||||||||||| ||||| |||||| |
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| T |
4551665 |
aaaaaagtgaatcataaattatcttccatacatacctgaatttgg |
4551709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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