View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21592_high_13 (Length: 262)
Name: NF21592_high_13
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21592_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 25632871 - 25632638
Alignment:
| Q |
18 |
caattgtgttaattgagtgaaagtgaaagtgaataattgtgttaactgttatattcaattgagatcgaaccaacaagtgaactgatatgaattgtattga |
117 |
Q |
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| T |
25632871 |
caattgtgttaattgagttaaagtgaaagtaaataattgtgttaactgttatattcaattgagatcgaaccaacaagtgaactgatatgaattatattga |
25632772 |
T |
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| Q |
118 |
gctcaatttaaattcaattttacaacccatcccaccaaagcaaaaggcttgtagtaagaacatgcaattgttgattcacattgaaaatgttggtgagtga |
217 |
Q |
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| T |
25632771 |
gctcaatttaaattcaattttacaacccatcccaccaaagcaaaaggcttgtagtaagaacatgcaattgttgattcacattgaaaatgttggtgagtgg |
25632672 |
T |
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| Q |
218 |
aagcacgtaataacctcccatgcatgaaacctatg |
252 |
Q |
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| T |
25632671 |
aagcacgtaat-acctcccatgcatgaaacctatg |
25632638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 25644182 - 25644127
Alignment:
| Q |
71 |
ttcaattgagatcgaaccaacaagtgaactgatatgaattgtattgagctcaattt |
126 |
Q |
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| T |
25644182 |
ttcaaatgggattgaaccaacaagtgaactgataaggattgtatcgagctcaattt |
25644127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 25644121 - 25644073
Alignment:
| Q |
149 |
ccaccaaagcaaaaggcttgtagtaagaacatgcaattgttgattcaca |
197 |
Q |
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| T |
25644121 |
ccaccaaaacaaaacgtttatagtaagaacatgcaattgttgatgcaca |
25644073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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