View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21592_high_14 (Length: 238)

Name: NF21592_high_14
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21592_high_14
NF21592_high_14
[»] chr6 (4 HSPs)
chr6 (94-223)||(15863359-15863482)
chr6 (14-99)||(15860532-15860617)
chr6 (146-217)||(2405786-2405857)
chr6 (150-217)||(2407473-2407540)
[»] chr3 (3 HSPs)
chr3 (159-223)||(12373967-12374031)
chr3 (19-128)||(12672551-12672660)
chr3 (137-217)||(11380767-11380847)
[»] scaffold0775 (1 HSPs)
scaffold0775 (26-113)||(439-526)
[»] chr5 (1 HSPs)
chr5 (162-217)||(42539053-42539108)
[»] chr4 (1 HSPs)
chr4 (150-217)||(51686363-51686430)
[»] chr2 (1 HSPs)
chr2 (24-119)||(22529733-22529828)
[»] chr8 (2 HSPs)
chr8 (181-223)||(5680128-5680170)
chr8 (137-217)||(5301054-5301134)


Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 15863359 - 15863482
Alignment:
Q  94 agttggcaccagtattgaccaggaggggaggccgaggatgcaacagcagcatcaggagcaggaacaggagtatttgatgttttggacagatttttaggac 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||||||||||||||    
T  15863359 agttggcaccagtattgaccaggaggggaggccgaggatgcaacagcagcatcatgagcagg------agtatttgatgttttggacagatttttaggac 15863452  T
Q  194 ttggtgttagttttcatgacatttgttcgt 223  Q
    ||||||||||||||||||||||||||||||    
T  15863453 ttggtgttagttttcatgacatttgttcgt 15863482  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 15860532 - 15860617
Alignment:
Q  14 ttgtcatgttgatgagtagttgggtcagaaggggatgaacaacgagcagttgtatgcggccttgcgcgatattagggagcagttgg 99  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15860532 ttgtcaggttgatgagtagttgggtcagaaggggatgaacaacgagcagttgtatgcggccttgcgcgatattagggagcagttgg 15860617  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 2405857 - 2405786
Alignment:
Q  146 caggagcaggaacaggagtatttgatgttttggacagatttttaggacttggtgttagttttcatgacattt 217  Q
    ||||| ||||| ||| ||||||| |||||| ||| |||||||||||| |||||||   ||||||||||||||    
T  2405857 caggaccaggaccagtagtattttatgtttaggatagatttttaggatttggtgtatattttcatgacattt 2405786  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 2407473 - 2407540
Alignment:
Q  150 agcaggaacaggagtatttgatgttttggacagatttttaggacttggtgttagttttcatgacattt 217  Q
    ||||||| ||| ||||||| |||||| ||| ||||||||||||||||||||   ||||||| ||||||    
T  2407473 agcaggaccagtagtattttatgtttaggatagatttttaggacttggtgtatattttcataacattt 2407540  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 12373967 - 12374031
Alignment:
Q  159 aggagtatttgatgttttggacagatttttaggacttggtgttagttttcatgacatttgttcgt 223  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  12373967 aggagtattttatgtttcggacagatttttaggacttggtgttagtttttatgacatttgttcgt 12374031  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 12672551 - 12672660
Alignment:
Q  19 atgttgatgagtagttgggtcagaaggggatgaacaacgagcagttgtatgcggccttgcgcgatattagggagcagttggcaccagtattgaccaggag 118  Q
    ||||||||||| | ||||||||| |||  |||| |   ||||| |||||||||||||||| | || ||||||||||| | |||||| || ||||||||||    
T  12672551 atgttgatgagcacttgggtcaggaggtaatgagccctgagcaattgtatgcggccttgcaccatgttagggagcagatagcaccaataatgaccaggag 12672650  T
Q  119 gggaggccga 128  Q
    | ||| ||||    
T  12672651 gcgagcccga 12672660  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 11380847 - 11380767
Alignment:
Q  137 cagcagcatcaggagcaggaacaggagtatttgatgttttggacagatttttaggacttggtgttagttttcatgacattt 217  Q
    ||||| || ||||| |||||  || ||||||| |||||| ||| ||||||||||||||||||||   ||||||||||||||    
T  11380847 cagcatcaacaggaccaggagtagtagtattttatgtttaggatagatttttaggacttggtgtatattttcatgacattt 11380767  T

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Target: scaffold0775 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 526 - 439
Alignment:
Q  26 tgagtagttgggtcagaaggggatgaacaacgagcagttgtatgcggccttgcgcgatattagggagcagttggcaccagtattgacc 113  Q
    |||||| |||| |||| ||||||||| ||  ||||||||||||  ||||||||||||| ||||||||  ||||||||| || ||||||    
T  526 tgagtatttggttcaggaggggatgagcacagagcagttgtatcaggccttgcgcgatgttagggagaggttggcacccgttttgacc 439  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 42539053 - 42539108
Alignment:
Q  162 agtatttgatgttttggacagatttttaggacttggtgttagttttcatgacattt 217  Q
    ||||||| |||||| ||| ||||||||||||||||||||   ||||||||||||||    
T  42539053 agtattttatgtttaggatagatttttaggacttggtgtatattttcatgacattt 42539108  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 51686363 - 51686430
Alignment:
Q  150 agcaggaacaggagtatttgatgttttggacagatttttaggacttggtgttagttttcatgacattt 217  Q
    ||||||| ||| ||||||| ||||||  || ||||||||||||||||||||   ||||||||||||||    
T  51686363 agcaggaccagtagtattttatgtttatgatagatttttaggacttggtgtatattttcatgacattt 51686430  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 22529828 - 22529733
Alignment:
Q  24 gatgagtagttgggtcagaaggggatgaacaacgagcagttgtatgcggccttgcgcgatattagggagcagttggcaccagtattgaccaggagg 119  Q
    ||||| || ||||||||| | ||||||| ||  || |||||||||||||| |||||| ||  || ||||||||||||||  ||||| |||||||||    
T  22529828 gatgattacttgggtcaggaagggatgagcagtgaccagttgtatgcggcattgcgccattatatggagcagttggcacttgtattaaccaggagg 22529733  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 5680128 - 5680170
Alignment:
Q  181 agatttttaggacttggtgttagttttcatgacatttgttcgt 223  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  5680128 agatttttaggacttggtgtatattttcatgacatttgttcgt 5680170  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 5301134 - 5301054
Alignment:
Q  137 cagcagcatcaggagcaggaacaggagtatttgatgttttggacagatttttaggacttggtgttagttttcatgacattt 217  Q
    ||||| || ||||| || || ||| ||||||| |||||| ||| | ||||||||||||||||||   ||||||||||||||    
T  5301134 cagcatcagcaggaccaagaccagtagtattttatgtttaggatatatttttaggacttggtgtatattttcatgacattt 5301054  T

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