View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21592_high_3 (Length: 455)
Name: NF21592_high_3
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21592_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 6 - 439
Target Start/End: Original strand, 13348366 - 13348799
Alignment:
| Q |
6 |
agagagatgaaccatatcatccaagcgctcttagttataagtgaaaaaatatcaactaatataaaacaagtacaaaataatcctcgtatatattggattt |
105 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13348366 |
agagacatgaaccatcttatccaagcgctcttagttataagtgacaaaatattaactaatataaaacaagtacaaaataatcctcgtaaatattggattt |
13348465 |
T |
|
| Q |
106 |
aaaggggnnnnnnntatcttgaagaatgaatgaaatattacaaacctgcagcaggggtaatgcaaaccaaaccagtaatcatgccttgaacagcaccaat |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348466 |
aaaggggaaaaaaatatcttgaagaatgaatgaaatattacaaacctgcagcaggggtaatgcaaaccaaaccagtaatcatgccttgaacagcaccaat |
13348565 |
T |
|
| Q |
206 |
aacagaaggctttctgaagaaaatgacatcaaggaagacccaagtaagcaagctagtagcagtgcaagcatgtgtgttcaagacagccaatgaagcatcc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348566 |
aacagaaggctttctgaagaaaatgacatcaaggaagacccaagtaagcaagctagtagcagtgcaagcatgtgtgttcaagacagccaatgaagcatcc |
13348665 |
T |
|
| Q |
306 |
aagccaactgagtaaggatctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataagaaggagattgtttggtgggaacc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348666 |
aagccaactgagtaaggatctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataagaaggagattgtttggtgggaacc |
13348765 |
T |
|
| Q |
406 |
tttccctgtctttgtttagacgtggtccaacctg |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13348766 |
tttccctgtctttgtttagacgtggtccaacctg |
13348799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 39725518 - 39725594
Alignment:
| Q |
162 |
gtaatgcaaaccaaaccagtaatcatgccttgaacagcaccaataacagaaggctttctgaagaaaatgacatcaag |
238 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||||| || || ||| ||||||| ||||||||||| |
|
|
| T |
39725518 |
gtaatgcaaacaagaccagtaatcatgccttgaacagctccaataactgatggttttttgaagaatatgacatcaag |
39725594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 39725671 - 39725771
Alignment:
| Q |
315 |
gagtaaggatctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataagaaggagattgtttggtgggaacctttccctgt |
414 |
Q |
| |
|
||||| |||||||| || ||||| |||| |||||||||||||| || ||||| ||||| ||| | || | | ||||||||||||||| || ||||||| |
|
|
| T |
39725671 |
gagtagggatctccaccgttgaaacctgcccatcccatccatagtaaccctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgt |
39725770 |
T |
|
| Q |
415 |
c |
415 |
Q |
| |
|
| |
|
|
| T |
39725771 |
c |
39725771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 5624573 - 5624660
Alignment:
| Q |
325 |
ctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataagaaggagattgtttggtgggaacctttccct |
412 |
Q |
| |
|
|||| |||||||| |||| ||| ||||||||||| | |||||||||||||| |||||| | | ||||||||||||||| || ||||| |
|
|
| T |
5624573 |
ctccaccattgaaccctgaccaacccatccataacaatcctgctcctgctagcataagcaatacattgtttggtgggaatctctccct |
5624660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University