View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21592_high_9 (Length: 313)
Name: NF21592_high_9
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21592_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 37617995 - 37617742
Alignment:
| Q |
19 |
taactcacttagacgagcccttgaaaattccatggcnnnnnnnaatatttcttcatcttctgtccctaaatatgatgcctcatataaactcaacataccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37617995 |
taactcacttagacgagcccttgaaaattccatggctttttttaatatttcttcatcttctgtccctaaatatgatgcctcatataaactcaacataccc |
37617896 |
T |
|
| Q |
119 |
caaacatctttggtgagtgattcattgaaattgccactcttgtccaaaaacttcctgaaaacatctacaaccaaacaaccacactaatcaaatcattaag |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37617895 |
caaacatctttggtaagtgattcattgaaattgccactcttgtccaaaaacttcctgaaaacatctaca--------accacactaatcaaatcattaag |
37617804 |
T |
|
| Q |
219 |
tttatttcttttagcagcacctaagtaagctactttatgtacaataattattataaatgtga |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37617803 |
tttatttcttttagcagcacctaagtaagctactttatgtacaataattattataaatgtga |
37617742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 37626377 - 37626194
Alignment:
| Q |
19 |
taactcacttagacgagcccttgaaaattccatggcnnnnnnnaatatttcttcatcttctgtccctaaatatgatgcctcatataaactcaacataccc |
118 |
Q |
| |
|
||||||| ||||| |||| |||||||| | |||||| ||||||||||||||||| || ||||||| |||||| ||||||| || ||||||||| |
|
|
| T |
37626377 |
taactcatttagatgagcacttgaaaacttcatggctctctttaatatttcttcatcttcagttcctaaatgtgatgcttcatataggcttaacataccc |
37626278 |
T |
|
| Q |
119 |
caaacatctttggtgagtgattcattgaaattgccactcttgtccaaaaacttcctgaaaacatctacaaccaaacaaccacac |
202 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||||||||||||||| | ||| ||||||| |||||||||||| ||| |||| |
|
|
| T |
37626277 |
caaatatctttggtgagtgactccttgaaattgccactcttgtccaaatatttcttgaaaacgtctacaaccaaaaaacaacac |
37626194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University