View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21592_low_1 (Length: 607)
Name: NF21592_low_1
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21592_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 63 - 504
Target Start/End: Original strand, 44828323 - 44828781
Alignment:
| Q |
63 |
tttgcagtgttaatatttatttatttcctttgtgcatatatattgacttatttatttagtctcagatagcagcaaaatcctagtaaa------atgagag |
156 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||| || | | |
|
|
| T |
44828323 |
tttgcaatgttaatatttatttatttcctttgtgcatat----tgacttattta----gtctcagatagca---aaatccaagtaaacctgttataaatg |
44828411 |
T |
|
| Q |
157 |
agaattgttcataattgagtaacattgaaaacaaatgctacatttcttttccatataattttgaaggaataggtaggtagttgcaaggcaaggaa--tgt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || ||| |
|
|
| T |
44828412 |
agaattgttcataattgagtaacattgaaaacaaatgctacatttctttcccatataattttgaaggaataggtagg----gccaaggcaagaaaattgt |
44828507 |
T |
|
| Q |
255 |
t------------aattgacattaattgctgtggaatgttaataatatacac--agataacactttcaagataacttttcaattcttc--nnnnnnnnta |
338 |
Q |
| |
|
| | |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |
|
|
| T |
44828508 |
tgaattaaccacaagttgacattaattgcggtggaatgttaataatatacacaaagacaacactttcaagataacttttcaattcttcaaaaaaaaaaaa |
44828607 |
T |
|
| Q |
339 |
ataacttttttcaagtgtcaatcaacaaattatgcttgtaatatcaatatttcttagccttgatat----------gcagtacagatcttaaa-aatgtc |
427 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
44828608 |
aaaacttttttcaagtgtcaatcaacaaattatacatgtaatatcaatat---ttagcctttatatagaatgttaggcagtacagatcttaaagaatgtc |
44828704 |
T |
|
| Q |
428 |
acttgcaagctaaataattccttccaaacgtagctaacaaatgtgggatccttgttactcacaattgcatgaagctt |
504 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
44828705 |
acttgcaacctaaataattccttccaaacgtggctaagaaatgtaggatccttgtcactcacaattgcatgaagctt |
44828781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 44828232 - 44828287
Alignment:
| Q |
12 |
atgaactacgtacgcaatgttgaatagattatacaaatcaacggtgttgaatttgc |
67 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
44828232 |
atgaactacgtacgcaatgttgaacagtttatacaaatcaacggtgttggatttgc |
44828287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 589
Target Start/End: Original strand, 44828782 - 44828829
Alignment:
| Q |
542 |
gatgtgaaataatgtttgatgagaatgaattaattgcccatacttaac |
589 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44828782 |
gatgtaaaataatgtttgatgagaatgaattaattgcccatacttaac |
44828829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University