View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21592_low_11 (Length: 283)
Name: NF21592_low_11
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21592_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 33806751 - 33806485
Alignment:
| Q |
1 |
tgatagtctgagttagttcttaatagggttgaacaggttacacaggtacacatttcaagccaaaggtgtttgcaaatgaatctgtccagtcttctttcag |
100 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806751 |
tgatggtctaagttagttcttaatagggttgaacaggttacacaggtacacatttcaagccaaaggtgtttgcaaatgaatctgtccagtcttctttcag |
33806652 |
T |
|
| Q |
101 |
tgtatcttcttccacttctaccattttgccaagcgaatgttgcacctttggtggtaaggtgtatcaggttatttctattagtccacaattgaaagccctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33806651 |
tgtatcttcttccacttctaccattttgccaagcgaatgttgcacctttggtgggaaggtgtatcaggttatttctattagtccacaattgaaagtcctt |
33806552 |
T |
|
| Q |
201 |
cattgcagttctagaaggtcaataataccccttgtgctcataagctcctaagatggagttgaaatct |
267 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
33806551 |
cattgcagttctggaaggtcaataatgccccttgtgcttataagctcctaagatggagttgaaatct |
33806485 |
T |
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