View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21592_low_6 (Length: 398)
Name: NF21592_low_6
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21592_low_6 |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 1182042 - 1182334
Alignment:
| Q |
12 |
tgagatgaataacacccgtgaattagttgaattaccagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcaca |
111 |
Q |
| |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182042 |
tgagaagaataacacccgtgaattagttgaattatcagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcaca |
1182141 |
T |
|
| Q |
112 |
gtttcaaaacacaaagcaaggctagtggctagaggcttcctgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatg |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182142 |
gtttcaaaacacaaagcaaggctagtggctagaggcttcctgcagcgatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatg |
1182241 |
T |
|
| Q |
212 |
ggagattggttgttgcattagatagcagtaagaaatggtcattgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182242 |
ggagattggttgttgcattagatagcagtaagaaatgatcattgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaa |
1182334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 359
Target Start/End: Original strand, 18194053 - 18194360
Alignment:
| Q |
52 |
aagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttcc |
151 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| ||| ||||||| ||||| || | || ||| ||||||| || ||||||||||||| |||| |
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| T |
18194053 |
aagaagaaaaccattgatgttaaatggattttcaaggtgaaattgaatcctgatggttcaatctctaaatacaaagccagattagtggctagaggtttcc |
18194152 |
T |
|
| Q |
152 |
tgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatgggagattggttgttgcattagatagcagtaagaaatggtc |
251 |
Q |
| |
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| ||||||||||||||||| |||||||| || ||||| | ||| || ||| |||||| | |||||||| || ||| | | |||||||| || ||||| |
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| T |
18194153 |
tacagagatatggtgttgactataatgaggtatttgctccagttgctagactagaaactattagattggtagtggcacttgcaagcagtaaaaactggtc |
18194252 |
T |
|
| Q |
252 |
attgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaagtgtatatgttactcaacctccaggatttgaagtaaaagtaaaggag |
351 |
Q |
| |
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| | | ||||||||||| |||||| ||| | ||||||| | | ||||| | || ||| |||| ||||| |||||||||||||||| | |||||| |
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| T |
18194253 |
actatcacatttagatgtaaagtctgcatttctgaatggaccacttgaagagaaagtgtatattacacaaccaccaggatttgaagtaagtgggaaggag |
18194352 |
T |
|
| Q |
352 |
catatggt |
359 |
Q |
| |
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|||||||| |
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|
| T |
18194353 |
catatggt |
18194360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 382
Target Start/End: Original strand, 1182340 - 1182371
Alignment:
| Q |
351 |
gcatatggtatacgaactgcataagacacttt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
1182340 |
gcatatggtatacgaactgcataagacacttt |
1182371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 31 - 359
Target Start/End: Complemental strand, 8169841 - 8169513
Alignment:
| Q |
31 |
gaattagttgaattaccagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaa |
130 |
Q |
| |
|
||||||||| | ||||||| ||||||||||| |||| |||||||||| |||||||| || ||| |||||||| ||| |||| ||||||| |||||||||| |
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| T |
8169841 |
gaattagttaacttaccagcgaagaagaaaaacattaatgtgaaatggattttcaaagtcaaattgaatccaaatgacacattttcaaagcacaaagcaa |
8169742 |
T |
|
| Q |
131 |
ggctagtggctagaggcttcctgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatgggagattggttgttgcatt |
230 |
Q |
| |
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| ||||| |||||||||||||| || ||||| |||| ||||||||||| ||||||| ||| |||| |||||| |||||||||| ||||||| |
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| T |
8169741 |
gactagtagctagaggcttcctacattaatatgaaattgactataatgaagtctttgcaccagtatcaaggatagaaatattgagattggttattgcatt |
8169642 |
T |
|
| Q |
231 |
agatagcagtaagaaatggtcattgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaagtgtatatgttactcaacctccagga |
330 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||| | ||||||||||| |||||| | || |
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| T |
8169641 |
aaccagcagtaagaaatggtcattgtttcatttagatgtaaagtctgcattcctaaatggactattggaagaaactatatatgttactgaacctctaaga |
8169542 |
T |
|
| Q |
331 |
tttgaagtaaaagtaaaggagcatatggt |
359 |
Q |
| |
|
|||||| | | || || |||||||||||| |
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| T |
8169541 |
tttgaaatcagaggaagggagcatatggt |
8169513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 359
Target Start/End: Complemental strand, 32369486 - 32369179
Alignment:
| Q |
52 |
aagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttcc |
151 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| || ||| ||||||| |||| || |||| ||| ||||||| || | || || ||||| ||| |
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|
| T |
32369486 |
aagaagaaaaccattgatgttaaatggattttcaaagtgaaattgaatcctgatgaatcattttccaaatacaaagccagattggttgccagaggtttct |
32369387 |
T |
|
| Q |
152 |
tgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatgggagattggttgttgcattagatagcagtaagaaatggtc |
251 |
Q |
| |
|
| |||||||||||||||| |||||||| || ||||| | ||| || | |||||||| | |||||||| || ||| | | | || ||||| ||||| |
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|
| T |
32369386 |
tatagagatatggtgttgactataatgaggtatttgctccagtagctaaattagaaactataagattggtggtggcactggcctgtagcaagaattggtc |
32369287 |
T |
|
| Q |
252 |
attgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaagtgtatatgttactcaacctccaggatttgaagtaaaagtaaaggag |
351 |
Q |
| |
|
||| | |||| ||||||| |||||| ||| | ||||||| |||||||||| | | |||||||| ||||| || | |||||||||||||| |||||| |
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|
| T |
32369286 |
attatctcatatagatgttaagtctgcatttctgaatggaccattagaagaagatatgtatgttacacaaccacctgaatttgaagtaaaagggaaggag |
32369187 |
T |
|
| Q |
352 |
catatggt |
359 |
Q |
| |
|
||| |||| |
|
|
| T |
32369186 |
catgtggt |
32369179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 359
Target Start/End: Complemental strand, 4959452 - 4959145
Alignment:
| Q |
52 |
aagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttcc |
151 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| ||| |||||| ||||| || | || ||| ||||||| || |||| |||||||| |||| |
|
|
| T |
4959452 |
aagaagaaaaccattgatgttaaatggattttcaaggtgaaattgaatcatgatgggtcaatctctaaatacaaagccagattagttgctagaggtttcc |
4959353 |
T |
|
| Q |
152 |
tgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatgggagattggttgttgcattagatagcagtaagaaatggtc |
251 |
Q |
| |
|
| |||||||||||||| || |||||||| || ||||| | ||| || ||| |||||| | |||||||| || ||| | | |||||||| || ||||| |
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|
| T |
4959352 |
tacagagatatggtgtagactataatgaggtatttgctccagttgctagactagaaactattagattggtagtggcacttgtaagcagtaaaaactggtc |
4959253 |
T |
|
| Q |
252 |
attgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaagtgtatatgttactcaacctccaggatttgaagtaaaagtaaaggag |
351 |
Q |
| |
|
||| | ||||||||||| |||||| ||| | ||||||| | | |||||| ||| ||| || | ||||| |||| ||||||||||| | ||||||| |
|
|
| T |
4959252 |
attatcacatttagatgtaaagtctgcatttctgaatggaccacttgaagaagatgtgtatattgcacaaccaccagtatttgaagtaagtggaaaggag |
4959153 |
T |
|
| Q |
352 |
catatggt |
359 |
Q |
| |
|
|||||||| |
|
|
| T |
4959152 |
catatggt |
4959145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 17071 - 17153
Alignment:
| Q |
68 |
atgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttc |
150 |
Q |
| |
|
|||| ||||| |||||||| || || ||||| || |||||||| ||||||| |||||||||||| |||| |||| ||||||| |
|
|
| T |
17071 |
atgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttc |
17153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 8190496 - 8190578
Alignment:
| Q |
68 |
atgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttc |
150 |
Q |
| |
|
|||| ||||| |||||||| || || ||||| || |||||||| ||||||| |||||||||||| |||| |||| ||||||| |
|
|
| T |
8190496 |
atgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttc |
8190578 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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