View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21592_low_7 (Length: 373)
Name: NF21592_low_7
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21592_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 44038028 - 44038388
Alignment:
| Q |
1 |
aattagttaattgcgatggattcgagtacgcctcaggaattcgattatgtgttcaaacttttgatgattggagactccggtgttggcaagagtagtctcc |
100 |
Q |
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| T |
44038028 |
aattagttaattgcgatggattcgagtacgcctcaggaattcgattatgtgttcaaactgttgatgattggagactccggtgttggcaagagtagtctcc |
44038127 |
T |
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| Q |
101 |
tcctctgtttcacctctgattctttcgaaaatctatctcccacaatcggtgagtcactcacttttttccttattcatttcattcttcatgtcatggtatc |
200 |
Q |
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| T |
44038128 |
tcctctgtttcacttctgattctttcgaaaatctatctcccacaatcggtgagtcactcacttttttccttattcatttcattcttcatgtcatggtatc |
44038227 |
T |
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| Q |
201 |
attcataaccattgcattgtgtaggtgttgattttaaggtcaaatacgtcactatagagggtaaaaagttgaagcttgccatttgggatacaggtctcaa |
300 |
Q |
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| T |
44038228 |
attcataaccattgcattgtgtaggtgttgattttaaggtcaaatacttcactatagacggtaaaaagttgaagcttgccatttgggatacaggtctcaa |
44038327 |
T |
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| Q |
301 |
cattgtttttattcattatttgtgattcactttagtagtgtttaaatgtatatatgatgat |
361 |
Q |
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| T |
44038328 |
cattgtttttattcattatttgtgattcactttagtagtgtttaaatgtatatatgatgat |
44038388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 39223751 - 39223819
Alignment:
| Q |
223 |
aggtgttgattttaaggtcaaatacgtcactatagagggtaaaaagttgaagcttgccatttgggatac |
291 |
Q |
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| T |
39223751 |
aggtgttgattttaaggtcaaatatgtcacgatagagggtaaaaagcttaagcttgccatttgggatac |
39223819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 39223571 - 39223654
Alignment:
| Q |
37 |
gaattcgattatgtgttcaaacttttgatgattggagactccggtgttggcaagagtagtctcctcctctgtttcacctctgat |
120 |
Q |
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| T |
39223571 |
gaattcgattatatgttcaaattgttaatgattggggattctggtgttggcaaaagtagtcttcttctcagattcacctctgat |
39223654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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