View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21592_low_8 (Length: 367)
Name: NF21592_low_8
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21592_low_8 |
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| [»] scaffold0025 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 9450012 - 9450232
Alignment:
| Q |
86 |
ctattatacactaatcatatatatgagaagaatgggattaaggataataacttgcagtacaagtaatctttgtattctatctttgattgtactttctgtt |
185 |
Q |
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|||||| ||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9450012 |
ctattacacactaaacatatagatgagaagaacgagattaaggataataacttgcagtacaagtaatctttgtattctatctttgattgtactttctgtt |
9450111 |
T |
|
| Q |
186 |
agtgtagtgcaattagattagtgttgtacaattagaatatgcctatatatat----tgattgtactccatctcttacacaataatgaagattcatgttcc |
281 |
Q |
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|||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
9450112 |
agtgtagtaaaattagattagtgtagtacagttagaatatgcctatatatatatagtgattgtactccatctcttacacaataataaagattcattttcc |
9450211 |
T |
|
| Q |
282 |
ttttctattgtttcataatat |
302 |
Q |
| |
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||||||||||||||||||||| |
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| T |
9450212 |
ttttctattgtttcataatat |
9450232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 9449427 - 9449604
Alignment:
| Q |
20 |
tcattaccttaaatacattgtaatagttaactgttcgcccgctgacacttttaagatcggctcattctattatacactaatcatatatatgagaagaatg |
119 |
Q |
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||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9449427 |
tcattcccttaaatacatcgtaatagttaactgttctcccgctgacacttttaaaatcggctcattctattatacactaatcatatatatgagaagaatg |
9449526 |
T |
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| Q |
120 |
ggattaaggataataacttgcagtacaagtaatctttgtattctatctttgattgtactttctgttagtgtagtgcaattaga |
202 |
Q |
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| T |
9449527 |
agattaaggataataacttg-----caagtaatctttgtattctatctttgattgtactttctgttagtgtagtacaattaga |
9449604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 9449644 - 9449771
Alignment:
| Q |
229 |
tatatatattgattgtactccatctcttacacaataatgaagattcatgttccttttctattgtttcataatatggtatcagagcactctctctgagagt |
328 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9449644 |
tatatatattgattgtactccatctctcacacaataatgaagattcatgttccttttctattgtttcataatatggtatcagagcactctctctgagagt |
9449743 |
T |
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| Q |
329 |
ggttctgaacctaaccgtttttcccttt |
356 |
Q |
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| T |
9449744 |
ggttctgaacctaaccgtttttctcttt |
9449771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 282 - 351
Target Start/End: Original strand, 40333150 - 40333219
Alignment:
| Q |
282 |
ttttctattgtttcataatatggtatcagagcactctctctgagagtggttctgaacctaaccgtttttc |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |
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| T |
40333150 |
ttttctattgtttcataatatggtatcagagcactctctttgagagtagttctgatcctaaccgtttttc |
40333219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 350
Target Start/End: Complemental strand, 15811269 - 15811047
Alignment:
| Q |
124 |
taaggataataacttgcagtacaagtaatctttgtattctatctttgattgtactttctgttagtgtagtgcaattagattagtgttgtacaattagaat |
223 |
Q |
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|||||| |||||||||||| |||||||||| | || | || || ||||||||||| | |||||||| || | || |||||| ||||||||||| | |
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| T |
15811269 |
taaggacaataacttgcagagcaagtaatctctatagttcattttgtattgtactttccatcagtgtagtagaacttgagtagtgtagtacaattagatt |
15811170 |
T |
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| Q |
224 |
atgcctatatatattgattgtactccatctcttacacaataatgaagattcatgttccttttctattgtttcataatatggtatcagagcactctctctg |
323 |
Q |
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| ||||||||| ||||||||||| ||| ||||| |||||||||||||| | | | ||||||||||||||||||||||||||||||| ||||| || |
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| T |
15811169 |
ag--ctatatatactgattgtactctctctattacataataatgaagattcttttctcatttctattgtttcataatatggtatcagagc--tctctttg |
15811074 |
T |
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| Q |
324 |
agagtggttctgaacctaaccgttttt |
350 |
Q |
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||||||||||||||||||||||||||| |
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| T |
15811073 |
agagtggttctgaacctaaccgttttt |
15811047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 349
Target Start/End: Complemental strand, 4575196 - 4575036
Alignment:
| Q |
187 |
gtgtagtgcaattagattagtgttgtacaattagaatatgcctatatatattgattgtactccatctcttacacaataatgaagattcatgttccttttc |
286 |
Q |
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||||||| ||| ||||||||||| |||||||||| | |||||||||||| |||||||| | | || |||||||||||| |||| | ||||| |
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| T |
4575196 |
gtgtagtacaactagattagtgtagtacaattag--tttgcctatatatagtgattgtaactctcccatttgtcaataatgaagaatcatttcagttttc |
4575099 |
T |
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| Q |
287 |
tattgtttcataatatggtatcagagcactctctctgagagtggttctgaacctaaccgtttt |
349 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |
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| T |
4575098 |
tattgtttcataatatggtatcagagcactctctttgagagtagttctgatcctaaccgtttt |
4575036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 326
Target Start/End: Complemental strand, 2368 - 2169
Alignment:
| Q |
124 |
taaggataataacttgcagtacaagtaatctttgtattctatctttgattgtactttctgttagtgtagtgcaattagattagtgttgtacaattagaat |
223 |
Q |
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|||||||||||||||||||| |||||||||| | || | | | | ||||||||||| ||| | |||| ||| | || |||||| |||||||||| | |
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| T |
2368 |
taaggataataacttgcagtgcaagtaatctctatagttcacatgt-attgtactttccattaatttagtacaacttgagtagtgtaatacaattagatt |
2270 |
T |
|
| Q |
224 |
atgcctatatatattgattgtactccatctcttacacaataatgaagattcatgttccttttctattgtttcataatatggtatcagagcactctctctg |
323 |
Q |
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| ||||||||| |||||||||||| ||| |||||||||||| ||||||| | | | |||| ||||||||||||||||||||||||| |||||| || |
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| T |
2269 |
ag--ctatatatactgattgtactccctctattacacaataattaagattcttttctcatttcctttgtttcataatatggtatcagagccctctctttg |
2172 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 274
Target Start/End: Complemental strand, 167862 - 167715
Alignment:
| Q |
124 |
taaggataataacttgcagtacaagtaatctttgtattctatctttgattgtactttctgttagtgtagtgcaattagattagtgttgtacaattagaat |
223 |
Q |
| |
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|||||||||||| ||||||| |||||||||| | || | || | | ||||||||||| |||||||||| ||| | | |||||| ||||||||||| | |
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| T |
167862 |
taaggataataatttgcagtgcaagtaatctctataattcatttgt-attgtactttccattagtgtagtacaacttgtgtagtgtagtacaattagatt |
167764 |
T |
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| Q |
224 |
atgcctatatatattgattgtactccatctcttacacaataatgaagattc |
274 |
Q |
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| ||||||||| |||||||||||| ||| |||||||||||||||||||| |
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| T |
167763 |
ag--ctatatatactgattgtactccctctattacacaataatgaagattc |
167715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 19117490 - 19117563
Alignment:
| Q |
86 |
ctattatacactaatcatatatatgagaagaatgggattaaggataataacttgcagtacaagtaatctttgta |
159 |
Q |
| |
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|||||| ||||||| |||| | |||||| ||||| | ||||||| ||||||||||||| |||||||||| |||| |
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|
| T |
19117490 |
ctattacacactaagcatacaaatgagatgaatgagcttaaggaaaataacttgcagtgcaagtaatctctgta |
19117563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 29556163 - 29556121
Alignment:
| Q |
261 |
aataatgaagattcatgttccttttctattgtttcataatatg |
303 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
29556163 |
aataatgaagattcattttagttttctattgtttcataatatg |
29556121 |
T |
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