View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21592_low_9 (Length: 334)
Name: NF21592_low_9
Description: NF21592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21592_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 39571730 - 39572046
Alignment:
| Q |
1 |
tctaaattaaaagactcgtcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgtcgtttcctgttgggagatacaacc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39571730 |
tctaaattaaaagactcgtcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgtcgtttcctgttggaagatacaacc |
39571829 |
T |
|
| Q |
101 |
ttgcaaataagttcttcgtggatttgatgaattcgatgttacgagcttgtattattctcagttcgcagctgaaatttacataagcagttatatgagatgg |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39571830 |
ttgcaaataagttcttcgtggacttgatgaattcgatgttacgagcttgtattattctcagttcgcagctgaaatttacataagcagttatatgagatgg |
39571929 |
T |
|
| Q |
201 |
atccattgagttattgagagtatagctagttaggaatttgtctagttatgtgttttagctagaaaaaagagaggaaattgaaggtaagaatatgaaaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39571930 |
atccattgagttattgagagtatagctagttaggaatttgtctagttatgtgttttagctagaaaaaagagaggaaattgaaggtaagaatatgaaaaag |
39572029 |
T |
|
| Q |
301 |
gttggtttgagtttgaa |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
39572030 |
gttggtttgagtttgaa |
39572046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 6 - 278
Target Start/End: Original strand, 39568918 - 39569190
Alignment:
| Q |
6 |
attaaaagactcgtcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgtcgtttcctgttgggagatacaaccttgca |
105 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
39568918 |
attaaaagactcatcccaaaagggtactgatttggtggaaacacttttgctgtttagttgaattcttttgttgtttcctgttggaagatacaaccttgca |
39569017 |
T |
|
| Q |
106 |
aataagttcttcgtggatttgatgaattcgatgttacgagcttgtattattctcagttcgcagctgaaatttacataagcagttatatgagatggatcca |
205 |
Q |
| |
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|| ||||| |||||||| |||| |||| | || || |||||||||||||| ||||| |||||||| ||| ||||||||| |||||| ||||||||| |
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| T |
39569018 |
aacaagtttttcgtggacttgacagattcaacatttcgggcttgtattattcttagttcacagctgaagtttgcataagcaggtatatggaatggatcca |
39569117 |
T |
|
| Q |
206 |
ttgagttattgagagtatagctagttaggaatttgtctagttatgtgttttagctagaaaaa-agagaggaaat |
278 |
Q |
| |
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|||| ||||||||| |||| | ||||||||||||||| ||||||||| |||||||||||| ||||||||||| |
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| T |
39569118 |
ttgaaaaattgagagtttagc-aattaggaatttgtctaattatgtgttgtagctagaaaaagagagaggaaat |
39569190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 39566252 - 39566506
Alignment:
| Q |
1 |
tctaaattaaaagactcgtcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgtcgtttcctgttgggagatacaacc |
100 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||| |
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| T |
39566252 |
tctagattaaaagactcatcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgttgtttcccgttggaagatataacc |
39566351 |
T |
|
| Q |
101 |
ttgcaaataagttcttcgtggatttgatgaattcgatgttacgagcttgtattattctcagttcgcagctgaaatttacataagcagttatatgagatgg |
200 |
Q |
| |
|
||||||||||||| ||||| ||||||| | |||| || || || ||||| || ||||||||||| | ||||| ||| ||||||||| ||| || ||||| |
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| T |
39566352 |
ttgcaaataagtttttcgtagatttgacggattcaatatttcgggcttgaatgattctcagttcaaaactgaagtttgcataagcagatatgtgggatgg |
39566451 |
T |
|
| Q |
201 |
atccattgagttattgagagtatagctagttaggaatttgtctagttatgtgttt |
255 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
39566452 |
atccatcgaaaaattgagagtatagctaaataggaatttgtctagttatatgttt |
39566506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 39585199 - 39584910
Alignment:
| Q |
1 |
tctaaattaaaagactcgtcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgtcgtttcctgttgggagatacaacc |
100 |
Q |
| |
|
||||||||||||||||| | ||||||||| | |||||||| |||| |||||| ||||| |||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
39585199 |
tctaaattaaaagactcattccaaaagggtagggatttggtagaaatacttttactgttgagttgaattcttttgttgtttcctgttggaagatacaacc |
39585100 |
T |
|
| Q |
101 |
ttgcaaataagttcttcgtggatttgatgaattcgatgttacgagcttgtattattctcagttcgcagctgaaatttacataagcagttatatgagatgg |
200 |
Q |
| |
|
||| ||| ||||| |||||||||||||||||||| |||| | |||||||||||||||||||| |||||||| ||| ||||||| | |||||| ||||| |
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| T |
39585099 |
ttgaaaacaagtttttcgtggatttgatgaattcagtgtttctggcttgtattattctcagttcacagctgaagtttgcataagctggtatatgggatgg |
39585000 |
T |
|
| Q |
201 |
atccattgagttattgagagtatagctagttagga--atttgtctagttatgtgttttagctagaaaaaagagaggaaattgaaggtaagaatat |
293 |
Q |
| |
|
||||||||| ||||||||| ||||||||| || |||||||||||||||| || ||| |||| ||||||||||| ||| ||||||||| |
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| T |
39584999 |
atccattgaaaatttgagagta----tagttaggaatatgtgtctagttatgtgttgcagttag-aaaaggagaggaaattaaagctaagaatat |
39584910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39581560 - 39581339
Alignment:
| Q |
1 |
tctaaattaaaagactcgtcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgtcgtttcctgttgggagatacaacc |
100 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |
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| T |
39581560 |
tctagattaaaagactcatcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgttgtttcctgttggaagatataacc |
39581461 |
T |
|
| Q |
101 |
ttgcaaataagttcttcgtggatttgatgaattcgatgttacgagcttgtattattctcagttcgcagctgaaatttacataagcagttatatgagatgg |
200 |
Q |
| |
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| ||||||||||| || |||||||||| | |||| || || || ||||| || ||||||||||| | ||||| ||| ||||||||| ||| || |||| |
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| T |
39581460 |
tagcaaataagttttttgtggatttgacggattcaatatttcgggcttgaatgattctcagttcaaaactgaagtttgcataagcagatatgtggcatgg |
39581361 |
T |
|
| Q |
201 |
atccattgagttattgagagta |
222 |
Q |
| |
|
||||||||| |||||||||| |
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| T |
39581360 |
atccattgaaaaattgagagta |
39581339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 39575000 - 39574800
Alignment:
| Q |
6 |
attaaaagactcgtcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgtcgtttcctgttgggagatacaaccttgca |
105 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| |||||| ||| || ||| |||||||||||||| | |||||||||||| ||||||||||||||| |
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|
| T |
39575000 |
attaaaagattcatcccaaaagggcactgatttggtagaaacattttagccgttgagttgaattcttttattgtttcctgttggaagatacaaccttgca |
39574901 |
T |
|
| Q |
106 |
aataagttcttcgtggatttgatgaattcgatgttacgagcttgtattattctcagttcgcagctgaaatttacataagcagttatatgagatggatcca |
205 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||||| ||||||||||||| ||||| ||| || ||||| || ||||||| || |||| ||||||||||| |
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|
| T |
39574900 |
aacaagtttttcgtggacttgatgaattcgatgtttcgagcttgtattaatctcaattcacaactgaagttaacataagaagacatataagatggatcca |
39574801 |
T |
|
| Q |
206 |
t |
206 |
Q |
| |
|
| |
|
|
| T |
39574800 |
t |
39574800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 39561543 - 39561751
Alignment:
| Q |
1 |
tctaaattaaaagactcgtcccaaaagggcactgatttggtggaaacacttttgctgtttagttgaattcttttgtcgtttcctgttgggagatacaacc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| || || |||||||| |||| ||||||| || |||||||| ||||||| |||||||||||| ||||||| || |
|
|
| T |
39561543 |
tctagattaaaagactcgtcccaaaaaggtacggatttggttgaaatttttttgctattgagttgaatacttttgttgtttcctgttggaagatacagcc |
39561642 |
T |
|
| Q |
101 |
ttgcaaataagttcttcgtggatttgatgaattcgatgttacgagcttgtattattctcagttcgcagctgaaatttacataagcagttatatgagatgg |
200 |
Q |
| |
|
||||||| | || || | || ||||||||||| ||||| || ||||| |||||||||||||| || ||||| ||| |||| |||| | | | ||||| |
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|
| T |
39561643 |
ttgcaaacatattttttgccgacttgatgaattcaatgtttcgtgcttgaattattctcagttcacaactgaagtttgcatatgcaggtgttttcgatgg |
39561742 |
T |
|
| Q |
201 |
atccattga |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
39561743 |
atccattga |
39561751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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