View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21593_high_12 (Length: 242)
Name: NF21593_high_12
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21593_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 31316399 - 31316594
Alignment:
| Q |
1 |
ttaaacccatgctatgagtctcttgtatgaacttcttaagaaaggataagagaaagattgagttgtctaaaggttccatttctacgataattcaagaaaa |
100 |
Q |
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| T |
31316399 |
ttaaacccatgctatgagtctcttgtatgaacttcttaggaaaggataagagaaagattgagttgtctaaaggttccatttctacaataattcaagaaaa |
31316498 |
T |
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| Q |
101 |
acactaaaacttgatgattacataaagaagtgatgatttttggtgaactagggaagaagagggaaagggacgtgaggtagggagaagaagaggaag |
196 |
Q |
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| T |
31316499 |
acactaaaacttgatgattacataaagaagtgatgatttttggtgaactagggaagaagaggaaaagggacgtgaggtagggagaagaagaggaag |
31316594 |
T |
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Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 18112850 - 18113044
Alignment:
| Q |
1 |
ttaaacccatgctatgagtctcttgtatgaacttcttaagaaaggataagagaaagattgagttgtctaaaggttccatttctacgataattcaagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18112850 |
ttaaacccatgctatgagtctcttgtatgaacttcttaggaaaggataagagaaagattgagttgtctaaaggttccatttctacaataattcaagaaaa |
18112949 |
T |
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| Q |
101 |
acactaaaacttgatgattacataaagaagtgatgatttttggtgaactagggaagaagagggaaagggacgtgaggtagggagaagaagaggaag |
196 |
Q |
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|||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18112950 |
acacaaaaacttgatgattgcataaa-aagtgatgatttttggtgaactagggaagaagagggaaaggggcgtgaggtagggagaagaagaggaag |
18113044 |
T |
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