View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21593_high_14 (Length: 229)

Name: NF21593_high_14
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21593_high_14
NF21593_high_14
[»] chr4 (5 HSPs)
chr4 (1-221)||(4848495-4848714)
chr4 (1-116)||(5198991-5199105)
chr4 (130-222)||(5199096-5199186)
chr4 (17-116)||(4151354-4151451)
chr4 (43-101)||(49583188-49583246)
[»] chr3 (1 HSPs)
chr3 (42-110)||(44652672-44652740)
[»] chr1 (3 HSPs)
chr1 (16-114)||(26828517-26828614)
chr1 (61-114)||(32900365-32900418)
chr1 (52-102)||(35811969-35812019)
[»] chr6 (3 HSPs)
chr6 (18-66)||(2721840-2721887)
chr6 (21-66)||(2718767-2718811)
chr6 (16-66)||(6134235-6134284)
[»] chr8 (2 HSPs)
chr8 (16-90)||(7411346-7411418)
chr8 (25-66)||(3424325-3424365)
[»] chr7 (1 HSPs)
chr7 (56-93)||(24118342-24118379)
[»] chr2 (1 HSPs)
chr2 (17-114)||(34656753-34656848)
[»] chr5 (3 HSPs)
chr5 (56-116)||(6329155-6329215)
chr5 (17-69)||(21253364-21253415)
chr5 (22-97)||(28342214-28342293)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4848714 - 4848495
Alignment:
Q  1 tattttcaatcatagcattgcacaaatattattaaaattattttatactatcatataatgtataatgatttaatttctcattgtttcttcataatttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  4848714 tattttcaatcatagcattgcacaaatattattaaaattattt-atactatcatataatgtataataacttaatttctcattgtttcttcataatttcat 4848616  T
Q  101 aacaataattcttttctctctcaa-aaaacaattcttttcataattttgtaatgacnnnnnnnncttatataaaccaaatcaaccactaataaattaggt 199  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  4848615 aacaataattcttttctctctcaaaaaaaaaattcttttcataattttgtaatgac-tttttttcttatataaaccaaatcaaccactaataaattaggt 4848517  T
Q  200 tttaacgttttagaagagacaa 221  Q
    ||||||||||||||||||||||    
T  4848516 tttaacgttttagaagagacaa 4848495  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 5198991 - 5199105
Alignment:
Q  1 tattttcaatcatagcattgcacaaatattattaaaattattttatactatcatataatgtataatgatttaatttctcattgtttcttcataatttcat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  5198991 tattttcaatcataacattgcacaaatattattaaaattattt-atattatcatataatgtataataacttaatttctcattgtttcttcataatttcat 5199089  T
Q  101 aacaataattcttttc 116  Q
     || ||||||||||||    
T  5199090 tactataattcttttc 5199105  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 5199096 - 5199186
Alignment:
Q  130 aattcttttcataattttgtaatgacnnnnnnnncttatataaaccaaatcaaccactaataaattaggttttaacgttttagaagagacaag 222  Q
    |||||||||||||||||||||||||         ||||||||||| |||| |||| ||||||||||||||| ||| |||||||||||||||||    
T  5199096 aattcttttcataattttgtaatga--attttttcttatataaacaaaattaacctctaataaattaggttgtaatgttttagaagagacaag 5199186  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 4151451 - 4151354
Alignment:
Q  17 attgcacaaatattattaaaattattttatactatcatataatgtataatgatttaatttctcattgtttcttcataatttcataacaataattcttttc 116  Q
    |||||| |||| |||||||||||||||  ||| | ||||||||||||||| ||  |||||||| |||||||||||||||||||||||  ||||| |||||    
T  4151451 attgcataaatcttattaaaattatttg-tac-accatataatgtataataatcaaatttctcgttgtttcttcataatttcataactctaattattttc 4151354  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 49583188 - 49583246
Alignment:
Q  43 ttatactatcatataatgtataatgatttaatttctcattgtttcttcataatttcata 101  Q
    |||||||||| |||| ||||||||   ||||||||||||| ||||||| ||||||||||    
T  49583188 ttatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 49583246  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 44652672 - 44652740
Alignment:
Q  42 tttatactatcatataatgtataatgatttaatttctcattgtttcttcataatttcataacaataatt 110  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||    
T  44652672 tttatactatcatgtaatgtataataatttaatttctaattgtttcttcatgatttcataactataatt 44652740  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 26828614 - 26828517
Alignment:
Q  16 cattgcacaaatattattaaaattattttatactatcatataatgtataatgatttaatttctcattgtttcttcataatttcataacaataattcttt 114  Q
    |||||||||||| |||||||| |||||| |||||| ||||||||||  ||  | ||||||||||||||||| ||||||| || ||||| |||| |||||    
T  26828614 cattgcacaaattttattaaacttattt-atactaacatataatgtgaaaaaacttaatttctcattgttttttcataagttaataactataactcttt 26828517  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 32900418 - 32900365
Alignment:
Q  61 tataatgatttaatttctcattgtttcttcataatttcataacaataattcttt 114  Q
    |||||| | |||||||||||||||||||||||||||||||||| | ||||||||    
T  32900418 tataataacttaatttctcattgtttcttcataatttcataactacaattcttt 32900365  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 35812019 - 35811969
Alignment:
Q  52 catataatgtataatgatttaatttctcattgtttcttcataatttcataa 102  Q
    ||||||||||||||| | ||||||||||| ||||||||| ||||| |||||    
T  35812019 catataatgtataataacttaatttctcactgtttcttcttaattccataa 35811969  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 2721887 - 2721840
Alignment:
Q  18 ttgcacaaatattattaaaattattttatactatcatataatgtataat 66  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  2721887 ttgcataaatattattaaaattattt-atactatcatataatgtataat 2721840  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 2718811 - 2718767
Alignment:
Q  21 cacaaatattattaaaattattttatactatcatataatgtataat 66  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||    
T  2718811 cacaaatattattaaaatta-tttatattatcatataatgtataat 2718767  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 6134235 - 6134284
Alignment:
Q  16 cattgcacaaatattattaaaattattttatactatcatataatgtataat 66  Q
    |||||||||||| |||||||||| |||| ||||||||| ||||||||||||    
T  6134235 cattgcacaaatcttattaaaatcattt-atactatcaaataatgtataat 6134284  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 7411346 - 7411418
Alignment:
Q  16 cattgcacaaatattattaaaattattttatactatcatataatgtataatgatttaatttctcattgtttcttc 90  Q
    |||| ||||||| |||||||||||| |||||  |||| ||||||||||||| | ||||||||| |||||||||||    
T  7411346 catttcacaaatcttattaaaatta-tttatgatatcttataatgtataataacttaatttct-attgtttcttc 7411418  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 3424325 - 3424365
Alignment:
Q  25 aatattattaaaattattttatactatcatataatgtataat 66  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  3424325 aatattataaaaattattt-atactatcatataatgtataat 3424365  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 24118379 - 24118342
Alignment:
Q  56 taatgtataatgatttaatttctcattgtttcttcata 93  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  24118379 taatgtataataacttaatttctcattgtttcttcata 24118342  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 34656753 - 34656848
Alignment:
Q  17 attgcacaaatattattaaaattattttatactatcatataatgtataatgatttaatttctcattgtttcttcataatttcataacaataattcttt 114  Q
    |||| ||| ||||||||||  |||||| ||| ||||||||| |||||||| | || |||| | | ||||||||||||| ||||||||| |||||||||    
T  34656753 attgaacagatattattaagtttattt-ataatatcatatactgtataataacttcattt-tgagtgtttcttcataagttcataacagtaattcttt 34656848  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 6329215 - 6329155
Alignment:
Q  56 taatgtataatgatttaatttctcattgtttcttcataatttcataacaataattcttttc 116  Q
    ||||||||||| | ||||| ||||| | |||||| |||||||||||||  |||||||||||    
T  6329215 taatgtataataacttaatatctcaatctttctttataatttcataacggtaattcttttc 6329155  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 21253364 - 21253415
Alignment:
Q  17 attgcacaaatattattaaaattattttatactatcatataatgtataatgat 69  Q
    ||||| ||||| |||||||| |||||| |||||||||||||||||||| ||||    
T  21253364 attgctcaaattttattaaacttattt-atactatcatataatgtatattgat 21253415  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 28342293 - 28342214
Alignment:
Q  22 acaaatattattaaaattattttatactatcatataat-----gtataatgatttaatttctcattgtttcttcataattt 97  Q
    |||||| ||||||||||||||| ||||| ||||||| |     ||||||| ||||||||| || |||||||||||||||||    
T  28342293 acaaattttattaaaattattt-atactgtcatatagtatagtgtataataatttaatttttcgttgtttcttcataattt 28342214  T

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