View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21593_high_2 (Length: 425)

Name: NF21593_high_2
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21593_high_2
NF21593_high_2
[»] chr8 (1 HSPs)
chr8 (54-110)||(12736360-12736416)
[»] chr2 (4 HSPs)
chr2 (54-106)||(44587722-44587774)
chr2 (71-108)||(8778676-8778713)
chr2 (57-106)||(40363228-40363277)
chr2 (49-106)||(45472419-45472476)
[»] chr1 (14 HSPs)
chr1 (54-106)||(15057666-15057718)
chr1 (54-105)||(25554553-25554604)
chr1 (54-106)||(39617317-39617369)
chr1 (55-93)||(18569780-18569818)
chr1 (49-106)||(5431350-5431407)
chr1 (49-106)||(10256790-10256847)
chr1 (49-106)||(39940560-39940617)
chr1 (55-88)||(41040223-41040256)
chr1 (54-106)||(748728-748780)
chr1 (49-93)||(5246215-5246259)
chr1 (54-106)||(14214608-14214660)
chr1 (54-106)||(19175667-19175719)
chr1 (54-86)||(37096177-37096209)
chr1 (49-121)||(47446705-47446777)
[»] chr6 (2 HSPs)
chr6 (49-112)||(18491664-18491727)
chr6 (56-104)||(10258385-10258433)
[»] chr3 (4 HSPs)
chr3 (49-106)||(39682618-39682675)
chr3 (49-104)||(39964306-39964361)
chr3 (56-109)||(54690830-54690883)
chr3 (54-86)||(105401-105433)
[»] chr7 (8 HSPs)
chr7 (54-106)||(3967784-3967836)
chr7 (50-106)||(47708410-47708466)
chr7 (49-111)||(37491277-37491339)
chr7 (67-112)||(2456673-2456718)
chr7 (57-106)||(3967714-3967763)
chr7 (49-110)||(8169170-8169231)
chr7 (49-82)||(27242447-27242480)
chr7 (54-106)||(2456345-2456397)
[»] chr5 (4 HSPs)
chr5 (54-93)||(14064889-14064928)
chr5 (56-106)||(3100486-3100536)
chr5 (56-108)||(15311939-15311991)
chr5 (54-110)||(43446864-43446920)
[»] chr4 (6 HSPs)
chr4 (47-106)||(5418587-5418646)
chr4 (49-88)||(9600001-9600040)
chr4 (49-87)||(31089960-31089998)
chr4 (57-106)||(53410917-53410966)
chr4 (54-106)||(26636519-26636571)
chr4 (54-106)||(38381985-38382037)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 12736416 - 12736360
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagtaacc 110  Q
    |||||||||| |||||||||||| |||||||||| |||||  |||||||||||||||    
T  12736416 acatacatcaatcattcaatgaacctaaaaagtagttttttgcttataatagtaacc 12736360  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 44587722 - 44587774
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||| ||||||||||||||||||||||| |||||  |||||||||||    
T  44587722 acatacatcactcattcaatgaatctaaaaagtagttttttgcttataatagt 44587774  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 8778676 - 8778713
Alignment:
Q  71 aatgaatctaaaaagtaatttttcccttataatagtaa 108  Q
    |||||||||||||||||||||||  |||||||||||||    
T  8778676 aatgaatctaaaaagtaattttttgcttataatagtaa 8778713  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 40363277 - 40363228
Alignment:
Q  57 tacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    ||||||||| |||||||||| |||||||||| |||||  |||||||||||    
T  40363277 tacatcatttattcaatgaacctaaaaagtagttttttgcttataatagt 40363228  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 45472476 - 45472419
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||| |||||||||||| ||| ||||||| |||||||||| ||||  |||||||||||    
T  45472476 agactacatacatcatttattgaatgaatttaaaaagtaaatttttacttataatagt 45472419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 15057718 - 15057666
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||| ||||||||||||||||||||||| |||||  |||||||||||    
T  15057718 acatacatcactcattcaatgaatctaaaaagtagttttttgcttataatagt 15057666  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 25554604 - 25554553
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatag 105  Q
    |||||||||||| |||||||||||||||||||| ||||||  ||||||||||    
T  25554604 acatacatcatttattcaatgaatctaaaaagttattttttgcttataatag 25554553  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 39617369 - 39617317
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||| ||||||||| ||||||||||||| |||||  |||||||||||    
T  39617369 acatacatcactcattcaataaatctaaaaagtagttttttacttataatagt 39617317  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 18569780 - 18569818
Alignment:
Q  55 catacatcattcattcaatgaatctaaaaagtaattttt 93  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  18569780 catacatcagtcgttcaatgaatctaaaaagtaattttt 18569818  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 5431407 - 5431350
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    ||||||||||| ||||| ||| |||||||||||||||| | ||||  |||||||||||    
T  5431407 agacaacatacttcatttattgaatgaatctaaaaagtgaatttttgcttataatagt 5431350  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 10256847 - 10256790
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||| |||||||||||| ||| |||||||||||||||| | ||||  |||||||||||    
T  10256847 agaccacatacatcatttattgaatgaatctaaaaagtgaattttttcttataatagt 10256790  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 39940560 - 39940617
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||| |||||||| ||| ||| |||||||||||||||||| ||||  |||||||||||    
T  39940560 agactacatacattatttattgaatgaatctaaaaagtaaatttttacttataatagt 39940617  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 41040256 - 41040223
Alignment:
Q  55 catacatcattcattcaatgaatctaaaaagtaa 88  Q
    ||||||||||| ||||||||||||||||||||||    
T  41040256 catacatcatttattcaatgaatctaaaaagtaa 41040223  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 748728 - 748780
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||| |||||||||||||||||||| |  |||||  |||||||||||    
T  748728 acatacatcactcattcaatgaatctaaaaaattgttttttgcttataatagt 748780  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 5246215 - 5246259
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaattttt 93  Q
    |||| |||||||||||| |||||||||||||||||| || |||||    
T  5246215 agactacatacatcatttattcaatgaatctaaaaaatagttttt 5246259  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 14214608 - 14214660
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||||| ||| |||||| ||||||||||| ||||  |||||||||||    
T  14214608 acatacatcatttattgaatgaacctaaaaagtaagtttttgcttataatagt 14214660  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 19175667 - 19175719
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||||| ||| |||||||||||||||||  ||||  |||||||||||    
T  19175667 acatacatcatttattgaatgaatctaaaaagtagatttttgcttataatagt 19175719  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 37096177 - 37096209
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagt 86  Q
    |||||||||||| ||||||||||||||||||||    
T  37096177 acatacatcatttattcaatgaatctaaaaagt 37096209  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 47446705 - 47446777
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagtaaccaggtggagtac 121  Q
    |||| |||||||||||| ||| ||||||| |||||||| | ||||  ||||||||||| ||| | ||||||||    
T  47446705 agactacatacatcatttattgaatgaatttaaaaagtgagtttttacttataatagtgaccggatggagtac 47446777  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 18491727 - 18491664
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagtaaccag 112  Q
    |||| ||||||||||||  || |||||||||||||||| ||||||  |||||||||||||||||    
T  18491727 agactacatacatcatttgttaaatgaatctaaaaagtgatttttttcttataatagtaaccag 18491664  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 10258385 - 10258433
Alignment:
Q  56 atacatcattcattcaatgaatctaaaaagtaatttttcccttataata 104  Q
    |||||||||| ||| |||||||||||||||| ||||||  |||||||||    
T  10258385 atacatcattaattgaatgaatctaaaaagttattttttacttataata 10258433  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 39682675 - 39682618
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||| |||||||||||| |||||||||| ||||||| ||||||||  |||||||||||    
T  39682675 agaccacatacatcatttattcaatgaacctaaaaaataattttttacttataatagt 39682618  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 39964361 - 39964306
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataata 104  Q
    |||| |||||||| ||| ||||||||||||||||||||| |||||  |||||||||    
T  39964361 agactacatacataatttattcaatgaatctaaaaagtagttttttgcttataata 39964306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 54690883 - 54690830
Alignment:
Q  56 atacatcattcattcaatgaatctaaaaagtaatttttcccttataatagtaac 109  Q
    |||||||||| | | |||||||||||||| ||||||||  ||||||||||||||    
T  54690883 atacatcatttaatgaatgaatctaaaaaataatttttttcttataatagtaac 54690830  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 105433 - 105401
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagt 86  Q
    |||||||||||| ||||||||||||||||||||    
T  105433 acatacatcatttattcaatgaatctaaaaagt 105401  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 3967784 - 3967836
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||||| |||||||||| |||||||||| |||||  |||||||||||    
T  3967784 acatacatcatttattcaatgaacctaaaaagtagttttttgcttataatagt 3967836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 47708466 - 47708410
Alignment:
Q  50 gacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||||||| ||||||||||||  ||||||||| |||||  |||||||||||    
T  47708466 gacaacatacatcactcattcaatgaacttaaaaagtagttttttgcttataatagt 47708410  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 37491339 - 37491277
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagtaacca 111  Q
    |||| |||||||||||| ||| ||| |||||||||||||| ||||  ||||||||||| ||||    
T  37491339 agactacatacatcatttatttaataaatctaaaaagtaaatttttgcttataatagtgacca 37491277  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 2456673 - 2456718
Alignment:
Q  67 attcaatgaatctaaaaagtaatttttcccttataatagtaaccag 112  Q
    ||||||||||||||||||||| |||||  ||||||||||| |||||    
T  2456673 attcaatgaatctaaaaagtagttttttacttataatagtgaccag 2456718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 3967763 - 3967714
Alignment:
Q  57 tacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    ||||||| |||||||||||| |||||||||| |||||  |||||||||||    
T  3967763 tacatcactcattcaatgaacctaaaaagtagttttttgcttataatagt 3967714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 8169170 - 8169231
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagtaacc 110  Q
    |||| |||||||||||| ||| |||||||||||||||| |  |||  |||||||||||||||    
T  8169170 agactacatacatcatttattgaatgaatctaaaaagttaacttttgcttataatagtaacc 8169231  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 27242480 - 27242447
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaa 82  Q
    ||||||||||||||||||||| ||||||||||||    
T  27242480 agacaacatacatcattcattgaatgaatctaaa 27242447  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 2456397 - 2456345
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||||| |||||||||| ||||||||||  ||||  |||||||||||    
T  2456397 acatacatcattaattcaatgaacctaaaaagtagatttttgcttataatagt 2456345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 14064889 - 14064928
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaattttt 93  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  14064889 acatacatcattaattgaatgaatctaaaaagtaattttt 14064928  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 3100486 - 3100536
Alignment:
Q  56 atacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||| ||| ||||||||||||| |||| ||||| |||||||||||    
T  3100486 atacatcattaattgaatgaatctaaaatgtaaattttcacttataatagt 3100536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 15311939 - 15311991
Alignment:
Q  56 atacatcattcattcaatgaatctaaaaagtaatttttcccttataatagtaa 108  Q
    |||||||||| ||| |||||||||||||| ||  |||| ||||||||||||||    
T  15311939 atacatcatttattaaatgaatctaaaaaatagatttttccttataatagtaa 15311991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 43446920 - 43446864
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagtaacc 110  Q
    |||||||||||| ||| |||| ||||||||||||| ||||  |||||| ||||||||    
T  43446920 acatacatcattaattaaatgtatctaaaaagtaaatttttgcttatattagtaacc 43446864  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 5418587 - 5418646
Alignment:
Q  47 aaagacaacatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||| |||||||||||| |||||||| ||||||||||||| ||||  |||||| ||||    
T  5418587 aaagaccacatacatcattaattcaatgtatctaaaaagtaaatttttgcttatattagt 5418646  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 9600040 - 9600001
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagtaa 88  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  9600040 agactacatacatcatttattcaatgaatctaaaaagtaa 9600001  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 31089960 - 31089998
Alignment:
Q  49 agacaacatacatcattcattcaatgaatctaaaaagta 87  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  31089960 agaccacatacatcatttattcaatgaatctaaaaagta 31089998  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 53410966 - 53410917
Alignment:
Q  57 tacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||||||||||||||||||||| ||  ||||  |||||||||||    
T  53410966 tacatcattcattcaatgaatctaaaaactagatttttacttataatagt 53410917  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 26636519 - 26636571
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||||| ||| |||||||||||||| ||| ||||  |||||||||||    
T  26636519 acatacatcatttattgaatgaatctaaaaaataaatttttacttataatagt 26636571  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 38382037 - 38381985
Alignment:
Q  54 acatacatcattcattcaatgaatctaaaaagtaatttttcccttataatagt 106  Q
    |||||||||||| | ||||||||||||||| |||| ||||  |||||||||||    
T  38382037 acatacatcatttaatcaatgaatctaaaatgtaaatttttgcttataatagt 38381985  T

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