View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21593_high_3 (Length: 418)
Name: NF21593_high_3
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21593_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 283560 - 283165
Alignment:
| Q |
16 |
aattattcactctgaaatgcctgcagaagcaaaaaacaatggactgcaattgtggatcaatttagcagctaatgacaaaatgtaatgtgatatttatgta |
115 |
Q |
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| T |
283560 |
aattattcactctgaaatgcctgcagaagcaaaaaacaatggactgcaattgtggatcaatttagcatctaatgacaaaatgtaatgtgatatttatgta |
283461 |
T |
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| Q |
116 |
tttttaattattttattggttcgaagtagattttaccaataactaatctttgttgaagaatctggctaatcaattttagtgcggtctccccttccaacta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
283460 |
tttttaattattttattggttcgaagtagattttaccaataactaatctttgttgaagaatctggctaatcaattttagtgcggtctccccttccaacca |
283361 |
T |
|
| Q |
216 |
cannnnnnncattcacaaaactcaaactcgagaccttatttaagaattctaaatctagtttcacttgaaccaatgtaatgtaatactatatagtgtgagg |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
283360 |
catttttttcattcacaaaactcaaactcgagaccttatttaagaattctaaatctagtttcacttgaaccaatgtaatgtaatactatatagtgtgagg |
283261 |
T |
|
| Q |
316 |
ttaaataatttaaannnnnnnnnnnnaatctatgttctcatatttagtcttacaaattacaaaactgcatatatttagtctttttcaattcttctc |
411 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
283260 |
ttaaataatttaaattttttgtttttaatctatgttctcatatttagtcttacaaattacaaaactgcatatatttagtctttttcaattcttctc |
283165 |
T |
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