View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21593_high_6 (Length: 347)
Name: NF21593_high_6
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21593_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 329
Target Start/End: Complemental strand, 21445715 - 21445392
Alignment:
| Q |
6 |
agcagcacagactctagacaacactgataataatttgagaatatgaaatcaactcaatgtaaactagagtatcggtggtgtgtcggtcggtgtcagacat |
105 |
Q |
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| T |
21445715 |
agcaccacagactctagacaacactgataataatttgagaatatgaaatcaactcaatgtaaactagagtatcggtggtgtgtcggtcggtgtcagacat |
21445616 |
T |
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| Q |
106 |
ttgacacattttcaatctgaaagtatcgatgctacacatagtagtacttttaactaattttgagtccttttgtattttgcgctccaggttggatctgtag |
205 |
Q |
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| T |
21445615 |
ttgacacattttcaatctgaaagtatcgatgctacacatagtagtacttttaactaattttgagtccttttgtattttgcgctccaggttggatctgtag |
21445516 |
T |
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| Q |
206 |
acgaggaatcaacgaagtctgatgaagagtacgacgatcttgcaatggaagatgtgttggaaaatggttattggacagatgatgactatgagttaaagac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
21445515 |
acgaggaatcaacgaagtctgatgaagagtacgacgatcttgcaatggaagatgtgttggaaaatggttattggacagatgatgattacgagttaaagac |
21445416 |
T |
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| Q |
306 |
caagcttgatgttgtggagcttgg |
329 |
Q |
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|||||||||||||||||||||||| |
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| T |
21445415 |
caagcttgatgttgtggagcttgg |
21445392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 290
Target Start/End: Original strand, 40686811 - 40686896
Alignment:
| Q |
205 |
gacgaggaatcaacgaagtctgatgaagagtacgacgatcttgcaatggaagatgtgttggaaaatggttattggacagatgatga |
290 |
Q |
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| T |
40686811 |
gacgaggaatcaaccaagtctgatgaagagtatgatgatttggcaatgcaagatgtgcctgaaagtggatattggtcagatgatga |
40686896 |
T |
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