View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21593_low_1 (Length: 446)
Name: NF21593_low_1
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21593_low_1 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 18112161 - 18112440
Alignment:
| Q |
18 |
tgtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18112161 |
tgtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaa |
18112260 |
T |
|
| Q |
118 |
tataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaacttat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18112261 |
tataatatacctcccctaagttggtcatcacaaaactatacctgaaacagctcaaattccaacttaagcttttatccaaccagcttaattaaaaacttat |
18112360 |
T |
|
| Q |
218 |
ggcttctatcaaattaagttcgacccaaccattaacacaacagttccaaaatgtataatcagccctaagaatcacttttac |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18112361 |
-gcttctatcaaattaagttcgatccaaccattaacacaacagttccaaaatgtataatcagccctaagaatcacttttac |
18112440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 5939288 - 5939144
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatca |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5939288 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatca |
5939189 |
T |
|
| Q |
391 |
tatgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5939188 |
tatgaattggttctagaaataaaacagtaagcaagacaatggatg |
5939144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 5835918 - 5835774
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatca |
390 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5835918 |
acttttactcaatataaacggggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatca |
5835819 |
T |
|
| Q |
391 |
tatgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5835818 |
tatgaattggttctagaaataaaacagtaagcaagacaatggatg |
5835774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 318 - 435
Target Start/End: Complemental strand, 28035086 - 28034969
Alignment:
| Q |
318 |
aatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatcatatgtattggttctagaaataaaacag |
417 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28035086 |
aatggttatgcaaagtcatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatcatatgaattggttctagaaataaaacac |
28034987 |
T |
|
| Q |
418 |
taagcaagacaattgatg |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28034986 |
taagcaagacaattgatg |
28034969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 18111878 - 18111736
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatca |
390 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||| |||||| ||| |||||||| | |||||||||| |||||||||||||| || |||| |
|
|
| T |
18111878 |
acttttactcaatacaatcgaggttttaatggttatgcaaagtcatgata--atgtgaatgaaattgtatatgatatgaatgttatgaaagtattaatca |
18111781 |
T |
|
| Q |
391 |
tatgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
| || ||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
18111780 |
tgtgaattggttcttgcaataaaacactaagcaagacaattgatg |
18111736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 291 - 435
Target Start/End: Original strand, 2746538 - 2746680
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatca |
390 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||| ||| || ||| |||||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
2746538 |
acttttactcaatacaatcgaggttttaatggttatgcaaagtcatgtta--atgtgaatgaaattttatatgatacgaatgttatgaaagtattgatca |
2746635 |
T |
|
| Q |
391 |
tatgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
| || ||||||||||| | ||||||| ||| |||||||||||||| |
|
|
| T |
2746636 |
tgtgaattggttctagcattaaaacactaatcaagacaattgatg |
2746680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 8055800 - 8055686
Alignment:
| Q |
75 |
attaataaaacagcttatcattttaccgttactcatataccaatataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaat |
174 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||| |||||||| ||||||| || ||||||||| |||||| || | |||||| ||||| |||||||| |
|
|
| T |
8055800 |
attaatagaacagcttatcatttcacaattactcagataccaatttaatatatctttcctaagttgttcatcaaaagattatacccgaaacagctcaaat |
8055701 |
T |
|
| Q |
175 |
tccaacttaagcttt |
189 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8055700 |
tccaacttaagcttt |
8055686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 19451706 - 19451626
Alignment:
| Q |
306 |
aaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgat |
388 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19451706 |
aaacgaggtttttatggttatgctaagtcatgata--atgtgaatgaaattttatatgatatcaatgttatgaaagtgttgat |
19451626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 28035387 - 28035466
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcatttt |
98 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||| ||||| |
|
|
| T |
28035387 |
gtttggctatttaagcacttccaaaacagcttaattaccatttaagcacttttaccattactaaaacggcttataatttt |
28035466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 60 - 298
Target Start/End: Complemental strand, 34455810 - 34455572
Alignment:
| Q |
60 |
ttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaatataatatacctcccctaagttggtcatcacaatactatacc |
159 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34455810 |
ttaagcacttttgtcactaataaaacagcttatcattttaccgttactcatataccaatataatatacctcccctaagttggtcatcacaaaactatacc |
34455711 |
T |
|
| Q |
160 |
tgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgacccaaccattaacacaaca |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34455710 |
tgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgacccaaacattaacacaaca |
34455611 |
T |
|
| Q |
260 |
gttccaaaatgtataatcagccctaagaatcacttttac |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34455610 |
gttccaaaatgtataatcatccctaagaatcacttttac |
34455572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 3078101 - 3077931
Alignment:
| Q |
17 |
ttgtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatatacca |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||| |||||||||||| |||||||| || |||||||||||||||| || |||||||||||||| |
|
|
| T |
3078101 |
ttgtttggccatttaagcacttctaaaacagcttaattacaatttaagcacttctgtcattactagaacagcttatcatttttccattactcatatacca |
3078002 |
T |
|
| Q |
117 |
atataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagct |
187 |
Q |
| |
|
|| || ||| ||| |||||| |||||||||||| | |||| |||||| || ||||||||||||||||| |
|
|
| T |
3078001 |
attcaacatatctctcctaagctggtcatcacaagataatacatgaaacaacttaaattccaacttaagct |
3077931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 291 - 435
Target Start/End: Original strand, 34456106 - 34456248
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatca |
390 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||| |||||| ||| ||| |||| | |||||||||| |||||||||| ||| ||||||| |
|
|
| T |
34456106 |
acttttactcaatacaatcgaggttttaatggttatgcaaagtcatgata--atgtgaacgaaattgtatatgatatgaatgttatgacagtattgatca |
34456203 |
T |
|
| Q |
391 |
tatgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
| || ||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
34456204 |
tgtgaattggttctagcattaaaacactaagcaagacaattgatg |
34456248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 21957831 - 21957700
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaat |
118 |
Q |
| |
|
||||||| | |||||||| |||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||| || | |||||||||||||| |
|
|
| T |
21957831 |
gtttggctatttaagcacctccaaaacagcttaattatcatttaagcacttttaccattactaaaacagcttatcatttctccataactcatataccaat |
21957732 |
T |
|
| Q |
119 |
ataatatacctcccctaagttggtcatcacaa |
150 |
Q |
| |
|
|| ||| ||| |||||||||||| |||||| |
|
|
| T |
21957731 |
tcaacatatctctcctaagttggtcttcacaa |
21957700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 4342065 - 4342242
Alignment:
| Q |
20 |
tttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaata |
119 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||||||||||||||||||| ||| ||| | || |||||||||| ||| || || ||||||||||||| |
|
|
| T |
4342065 |
tttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattctttctccattgctcatataccaatt |
4342164 |
T |
|
| Q |
120 |
taatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaa |
197 |
Q |
| |
|
|| ||| | | ||| | || ||||||||| | |||||||| || || ||||||||||||||||| ||||||||| |
|
|
| T |
4342165 |
caacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatccaaa |
4342242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 377
Target Start/End: Original strand, 3078383 - 3078467
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatg |
377 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||||||| | ||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3078383 |
acttttactcaatacaaaagagattttaatggttatgcaaaatcatg--ataatgtgaatgaaatcttatatgatatcaatgttatg |
3078467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 42785240 - 42785062
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaat |
118 |
Q |
| |
|
||||||| | |||||||| |||||| ||||||||||||||||||||| ||||| ||| | || |||||||||| |||| || || ||||||||||||| |
|
|
| T |
42785240 |
gtttggctatttaagcacctccaaaacagcttaattaccatttaagctcttttaccatgattagaacagcttattctttttccattgctcatataccaat |
42785141 |
T |
|
| Q |
119 |
ataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaa |
197 |
Q |
| |
|
|| ||| | | ||||| || ||||||||| | |||||||| || || ||||||| ||||||||| |||| |||| |
|
|
| T |
42785140 |
tcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccgacttaagctattatacaaa |
42785062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 48478694 - 48478872
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaat |
118 |
Q |
| |
|
||||||| | |||||||| |||||| ||||||||||||||||||||| ||||| ||| | || |||||||||| |||| || || ||||||||||||| |
|
|
| T |
48478694 |
gtttggctatttaagcacctccaaaacagcttaattaccatttaagctcttttaccatgattagaacagcttattctttttccattgctcatataccaat |
48478793 |
T |
|
| Q |
119 |
ataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaa |
197 |
Q |
| |
|
|| ||| | | ||||| || ||||||||| | |||||||| || || ||||||| ||||||||| |||| |||| |
|
|
| T |
48478794 |
tcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccgacttaagctattatacaaa |
48478872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 377
Target Start/End: Complemental strand, 3081573 - 3081491
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatg |
377 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3081573 |
acttttactcaatacaa--gagattttaatggttatgcaaagtcatgata--atgtgaatgaaatcttatatgatatcaatgttatg |
3081491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 3081843 - 3081967
Alignment:
| Q |
17 |
ttgtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatatacca |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||| ||||| ||||||| || |||| ||||||||||| || |||||||||||||| |
|
|
| T |
3081843 |
ttgtttggccatttaagcacttctaaaacagcttaattacaattta---------gtcattactagaacaacttatcatttttccattactcatatacca |
3081933 |
T |
|
| Q |
117 |
atataatatacctcccctaagttggtcatcacaa |
150 |
Q |
| |
|
|| || ||| ||| ||||| |||||||||||| |
|
|
| T |
3081934 |
attcaacatatctctactaagctggtcatcacaa |
3081967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 60 - 298
Target Start/End: Original strand, 31315756 - 31315993
Alignment:
| Q |
60 |
ttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaatataatatacctcccctaagttggtcatcacaatactatacc |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31315756 |
ttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaatataatatacctcccctaagttggtcatcacaaaactatacc |
31315855 |
T |
|
| Q |
160 |
tgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgacccaaccattaacacaaca |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31315856 |
tgaaacggctcaaattccaacttaagcttttatccaaacagcttaatt-aaaacttatggcttctatcaaattaagttcgacccaaccattaacacaaca |
31315954 |
T |
|
| Q |
260 |
gttccaaaatgtataatcagccctaagaatcacttttac |
298 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
31315955 |
attccaaaatgtataataatccctaagaatcacttttac |
31315993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 434
Target Start/End: Complemental strand, 31315459 - 31315318
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatca |
390 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||| |||||| ||| ||| |||| | |||||||||| || ||| ||||||| ||||||| |
|
|
| T |
31315459 |
acttttactcaatacaatcgaggttttaatggttatgcaaagtcatgata--atgtgaacgaaattgtatatgatatgaaagttgtgaaagtattgatca |
31315362 |
T |
|
| Q |
391 |
tatgtattggttctagaaataaaacagtaagcaagacaattgat |
434 |
Q |
| |
|
|| ||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
31315361 |
cgtgaattggttctagcattaaaacactaagcaagacaattgat |
31315318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 44341385 - 44341225
Alignment:
| Q |
29 |
ttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaatataatatacc |
128 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||| ||||||| ||||||| |||| |||||||||| || ||||||| |||||||| ||||||| | |
|
|
| T |
44341385 |
ttaagcacttccaaagcagcttaatcatcatttaatcactttttaaattaatagaacaacttatcatttcacaattactcagataccaatttaatatatc |
44341286 |
T |
|
| Q |
129 |
tcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttt |
189 |
Q |
| |
|
| || |||||| |||||| || | |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
44341285 |
tttccgaagttgttcatcaaaaaattatacccgaaacaactcaaattccaacttaagcttt |
44341225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 278
Target Start/End: Complemental strand, 31331225 - 31331021
Alignment:
| Q |
74 |
cattaataaaacagcttatcattttaccgttactcatataccaatataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaa |
173 |
Q |
| |
|
||||| || |||||||||| || || || |||||||||||||||| || ||| ||| |||||| ||||| |||||| | ||||||||||| || ||| |
|
|
| T |
31331225 |
cattactagaacagcttataatatttccattactcatataccaattcaacatatctctcctaagctggtcttcacaagataatacctgaaacaacttaaa |
31331126 |
T |
|
| Q |
174 |
ttccaacttaagcttttatccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgacccaaccattaacacaacagttccaaaatgtat |
273 |
Q |
| |
|
||| || ||||||| |||||||||| |||| || |||||||| ||| | ||| || || |||||||||||| | |||| ||||||||||| |||||| |
|
|
| T |
31331125 |
ttctaatttaagctattatccaaacgaattaaatagcaacttatgacttttgtcatatcaatttcgacccaaccttcaacaaaacagttccaacatgtat |
31331026 |
T |
|
| Q |
274 |
aatca |
278 |
Q |
| |
|
||||| |
|
|
| T |
31331025 |
aatca |
31331021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 278
Target Start/End: Complemental strand, 31337946 - 31337742
Alignment:
| Q |
74 |
cattaataaaacagcttatcattttaccgttactcatataccaatataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaa |
173 |
Q |
| |
|
||||| || |||||||||| || || || |||||||||||||||| || ||| ||| |||||| ||||| |||||| | ||||||||||| || ||| |
|
|
| T |
31337946 |
cattactagaacagcttataatatttccattactcatataccaattcaacatatctctcctaagctggtcttcacaagataatacctgaaacaacttaaa |
31337847 |
T |
|
| Q |
174 |
ttccaacttaagcttttatccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgacccaaccattaacacaacagttccaaaatgtat |
273 |
Q |
| |
|
||| || ||||||| |||||||||| |||| || |||||||| ||| | ||| || || |||||||||||| | |||| ||||||||||| |||||| |
|
|
| T |
31337846 |
ttctaatttaagctattatccaaacgaattaaatagcaacttatgacttttgtcatatcaatttcgacccaaccttcaacaaaacagttccaacatgtat |
31337747 |
T |
|
| Q |
274 |
aatca |
278 |
Q |
| |
|
||||| |
|
|
| T |
31337746 |
aatca |
31337742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 31343115 - 31343203
Alignment:
| Q |
292 |
cttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagt |
382 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| | ||| |||||| |||||||| | |||||||||| |||||||||||||| |
|
|
| T |
31343115 |
cttttactcaatacaattgaggttttaatggttatgcaaattcatg--ataatgtgaatgaaattgtatatgatatgaatgttatgaaagt |
31343203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 2696311 - 2696259
Alignment:
| Q |
192 |
tccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgaccca |
244 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
2696311 |
tccaaacagcttaattagcagcttatggcttctatcaaattaatttcgaccca |
2696259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 31346711 - 31346761
Alignment:
| Q |
384 |
ttgatcatatgtattggttctagaaataaaacagtaagcaagacaattgat |
434 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
31346711 |
ttgatcatgtgaattggttctagcaataaaacactaagcaagacaattgat |
31346761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 2742644 - 2742582
Alignment:
| Q |
192 |
tccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgacccaaccattaaca |
254 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
2742644 |
tccaaaaagcttaattagcagcttatggcttctatcaaattagtttcgacccagcctttaaca |
2742582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 6734801 - 6734533
Alignment:
| Q |
17 |
ttgtttggccacttaagcacttccaaac-cagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatatacc |
115 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||| |||| || |||||||||| |||||||| ||||||||||||| |
|
|
| T |
6734801 |
ttgtttggccatttaagcacttcaaaatacagcttaattacaatttaagcacttttgtaattactagaacagcttataattttaccattactcatatacc |
6734702 |
T |
|
| Q |
116 |
aatataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaactt |
215 |
Q |
| |
|
| | ||| ||| ||| || || || ||||||||| | ||| ||||||| |||||||||| |||||||||| |||||||||||||| || ||| ||||| |
|
|
| T |
6734701 |
agtttaacatatctctccaaatctgttcatcacaaaataatatctgaaacagctcaaattcaaacttaagctcttatccaaacagctcaactaacaactt |
6734602 |
T |
|
| Q |
216 |
atggcttctatcaaattaagttcgacccaaccattaacacaacagttccaaaatgtataatcagcccta |
284 |
Q |
| |
|
||| ||||||||||||||| ||||| |||||| |||||| | |||| || ||||||||||||||||| |
|
|
| T |
6734601 |
atgacttctatcaaattaatttcgagccaacctttaacaaagaagttaaaacatgtataatcagcccta |
6734533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 435
Target Start/End: Original strand, 31663002 - 31663141
Alignment:
| Q |
293 |
ttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatcata |
392 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| |||||| ||| |||||||| | |||||||||| |||||||||||||| | |||||| |
|
|
| T |
31663002 |
ttttactcaatacaa-cgaggttttaatggttatgcaaagtcatgata--atgtgaatgaaattgtatatgatatgaatgttatgaaagtatggatcatg |
31663098 |
T |
|
| Q |
393 |
tgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
|| ||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
31663099 |
tgaattggttctagcaataaaacactaagcaagataattgatg |
31663141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 435
Target Start/End: Original strand, 6735087 - 6735227
Alignment:
| Q |
293 |
ttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatcata |
392 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| | |||| ||| |||||||| |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
6735087 |
ttttactcaatacaaacgagattttaatggttatgcaaagtcacgata--atgtgaatgaaattttatatgatatcaatattatgaaaatgttgatcata |
6735184 |
T |
|
| Q |
393 |
tgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
|| |||| |||| | ||||||| |||||||| ||||||||| |
|
|
| T |
6735185 |
tgaattgattcttgcaataaaatgctaagcaaggcaattgatg |
6735227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 5600335 - 5600513
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaat |
118 |
Q |
| |
|
||||||| | |||||||| |||||| ||||||||||||||||||||| ||||| ||| | || |||||||||| |||| || || ||||||||||||| |
|
|
| T |
5600335 |
gtttggctatttaagcacctccaaaacagcttaattaccatttaagctcttttaccatgattagaacagcttattctttttccattgctcatataccaat |
5600434 |
T |
|
| Q |
119 |
ataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaa |
197 |
Q |
| |
|
|| ||| | | ||||| || ||||||||| | |||||||| || || ||||||| ||||||||| |||| |||| |
|
|
| T |
5600435 |
tcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccgacttaagctattatacaaa |
5600513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 2893878 - 2893789
Alignment:
| Q |
29 |
ttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaat |
118 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| ||||| ||| | || |||||||||| |||| || || ||||||||||||| |
|
|
| T |
2893878 |
ttaagcacctccaaaacagcttaattaccatttaagctcttttaccatgattagaacagcttattctttttccattgctcatataccaat |
2893789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 4853360 - 4853408
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcac |
67 |
Q |
| |
|
||||||| | |||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
4853360 |
gtttggctatttaagcacgtccaaaacagcttaattaccatttaagcac |
4853408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 44193369 - 44193109
Alignment:
| Q |
17 |
ttgtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatatacca |
116 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||||| |||||| | |||||||||||||| |
|
|
| T |
44193369 |
ttgtttggccatttaagcacttccaaaacagcttaattacaatttaagcacttttgtcattactagaacagcttataattttatcattactcatatacca |
44193270 |
T |
|
| Q |
117 |
atataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaactta |
216 |
Q |
| |
|
|| ||| || |||||| || ||||||||| | ||| ||||||| | |||||||| |||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
44193269 |
gcttaccatatttctcctaagctgttcatcacaaaataatatctgaaacagttcaaattcaaacttaagctcttatccaaacagcttaactagtaactta |
44193170 |
T |
|
| Q |
217 |
tggcttctatcaaattaagttcgacccaaccattaacacaacagttccaaaatgtataatc |
277 |
Q |
| |
|
|| ||||||||||||||| |||||||||| |||| ||| |||||||| |||||||||| |
|
|
| T |
44193169 |
tgacttctatcaaattaatttcgacccaatacttaatacagaagttccaatatgtataatc |
44193109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 14114088 - 14113814
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaat |
118 |
Q |
| |
|
||||||| | |||||||| |||||| ||||||||||||||||||||||| ||| ||| | || |||| ||||| |||| || || |||||||| |||| |
|
|
| T |
14114088 |
gtttggctatttaagcacgtccaaaacagcttaattaccatttaagcacctttaccatgattagaacaccttattctttttccattgctcatataacaat |
14113989 |
T |
|
| Q |
119 |
ataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaacttatg |
218 |
Q |
| |
|
|| ||| ||| ||||| || ||||||||| | |||||||| || || ||||||||||||||||| ||||| ||| | |||| | |||||||| |
|
|
| T |
14113988 |
tcaaaatatctctcctaaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatctaaagggtttaactcgcaacttatg |
14113889 |
T |
|
| Q |
219 |
gcttctatcaaattaagttcgacccaaccattaacacaacagttccaaaatgtataatcagccctaagaatcactt |
294 |
Q |
| |
|
||| ||||| | ||| ||||| |||||| || ||||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
14113888 |
acttttatcata-taatttcgatccaacctttgacacaacagttccaacgtgaataatcagccctatgaatcactt |
14113814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 22211524 - 22211387
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatg-aaagtgttgatc |
389 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| ||| |||||| |||||||| || |||||||||||||||||| |||| || |
|
|
| T |
22211524 |
acttttactcaatacaaacgagattttaatggttatgcaaagtcatg--ataatgtgaatgaaatcttgtatgatatcaatgttatgcaaag------tc |
22211433 |
T |
|
| Q |
390 |
atatgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
||||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
22211432 |
atatgaattggttctaacaataaaatgctaagcaagacaattgatg |
22211387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 377
Target Start/End: Complemental strand, 15088916 - 15088832
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatg |
377 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| ||| |||||| |||||||| || |||||||||||||||||| |
|
|
| T |
15088916 |
acttttactcaatacaaacgagattttaatggttatgcaaagtcatg--ataatgtgaatgaaatcttgtatgatatcaatgttatg |
15088832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 377
Target Start/End: Complemental strand, 22217985 - 22217916
Alignment:
| Q |
306 |
aaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatg |
377 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| |||||| |||||||| || |||||||||||||||||| |
|
|
| T |
22217985 |
aaacgagattttaatggttatgcaaagtcatg--ataatgtgaatgaaatcttgtatgatatcaatgttatg |
22217916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 291 - 388
Target Start/End: Complemental strand, 25336922 - 25336825
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgat |
388 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25336922 |
acttttactcaatataaacgacgttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatattaatgttatgaaagtgttgat |
25336825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 34150594 - 34150338
Alignment:
| Q |
29 |
ttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaatataatatacc |
128 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||| ||||||| |||||||| ||||| ||||||||| || ||||||| |||||||| ||||||| | |
|
|
| T |
34150594 |
ttaagcacttccaaagcagcttaatcatcatttaatcactttttacattaatagaacaggttatcatttcacaattactcagataccaatttaatatatc |
34150495 |
T |
|
| Q |
129 |
tcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaacttatggcttctatca |
228 |
Q |
| |
|
| ||||||||| |||||| || | |||||| ||||| |||||||||||||||||||| ||| ||||||||||||| || |||||||||||||| || |
|
|
| T |
34150494 |
tttcctaagttgttcatcaaaaaattatacccgaaaccgctcaaattccaacttaagc-tttgcccaaacagcttaactagcaacttatggcttctgcca |
34150396 |
T |
|
| Q |
229 |
-aattaagttcgacccaaccattaacacaacagttccaaaatgtataatcagccctaa |
285 |
Q |
| |
|
| |||| ||| | ||| |||||| |||||||| |||| || ||||||||||||||| |
|
|
| T |
34150395 |
tatttaatttcaatacaaacattaatacaacagtcccaacatctataatcagccctaa |
34150338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 5558756 - 5558808
Alignment:
| Q |
192 |
tccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgaccca |
244 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
5558756 |
tccaaacagcttaattagcagcttatggcttctatcaaattaatttcgaccca |
5558808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 25190741 - 25190581
Alignment:
| Q |
29 |
ttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaatataatatacc |
128 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||| ||||||| ||||||| ||||||||||||||| || ||||||| |||||||| ||||||| | |
|
|
| T |
25190741 |
ttaagcacttccaaagcagcttaatcatcatttaatcactttttaaattaatagaacagcttatcatttcacaattactcagataccaatttaatatatc |
25190642 |
T |
|
| Q |
129 |
tcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttt |
189 |
Q |
| |
|
| ||||||||| |||||| || | |||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
25190641 |
tttcctaagttgttcatcaaaaaattatacccgaaacagctgaaattccaacttaagcttt |
25190581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 41529378 - 41529430
Alignment:
| Q |
192 |
tccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgaccca |
244 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
41529378 |
tccaaacagcttaattagcagcttatggcttctatcaaattaatttcgaccca |
41529430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 37368195 - 37368145
Alignment:
| Q |
192 |
tccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgacc |
242 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||||||| ||||||| |
|
|
| T |
37368195 |
tccaaacagcttaactagcagcttatggcttctatcaaattaatttcgacc |
37368145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 5249303 - 5249029
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaat |
118 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||||||||||||| ||| ||| | || ||| ||| || |||| || || ||||||||||||| |
|
|
| T |
5249303 |
gtttggctatttaagcacttccaaaacagcttaattaccatttaagcacatttaccatgattagaactgctcattctttttccattgctcatataccaat |
5249204 |
T |
|
| Q |
119 |
ataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaacttatg |
218 |
Q |
| |
|
|| ||| ||| ||||| || ||||||||| | |||||||| || || |||||||| |||||||| ||||||||| | |||| || |||||||| |
|
|
| T |
5249203 |
tcaacatatctctcctaaactgttcatcacaagataatacctgacacaacttaaattccatcttaagctattatccaaagggtttaactagcaacttatg |
5249104 |
T |
|
| Q |
219 |
gcttctatcaaattaagttcgacccaaccattaacacaacagttccaaaatgtataatcagccctaagaatcactt |
294 |
Q |
| |
|
||| ||||| | ||| ||||| |||||| || ||||||||||||||| || |||||||| |||| ||||||||| |
|
|
| T |
5249103 |
acttttatcata-taatttcgatccaacctttgacacaacagttccaatgtgaataatcagtcctatgaatcactt |
5249029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 22031234 - 22031074
Alignment:
| Q |
29 |
ttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaatataatatacc |
128 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||| ||||||| ||||||| |||| |||||||||| || ||||||| |||||||| ||||||| | |
|
|
| T |
22031234 |
ttaagcacttccaaagcagcttaatcatcatttaatcactttttaaattaatagaacaacttatcatttcacaattactcagataccaatttaatatatc |
22031135 |
T |
|
| Q |
129 |
tcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttt |
189 |
Q |
| |
|
| || |||||| |||||| || | |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
22031134 |
tttccgaagttgttcatcaaaaaattatacccgaaacaactcaaattccaacttaagcttt |
22031074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 291 - 434
Target Start/End: Original strand, 31112924 - 31113064
Alignment:
| Q |
291 |
acttttactcaatataaacgaggttttaatggttatgcaaagttatgatataatgcgaatgaaactttatatgatatcaatgttatgaaagtgttgatca |
390 |
Q |
| |
|
||||||||| | || ||| ||||||||||||| ||||||| || |||||| ||| |||||||| ||||||| ||||||||| ||||||||||||||| | |
|
|
| T |
31112924 |
acttttacttagtacaaatgaggttttaatggatatgcaa-gtcatgata--atgtgaatgaaattttatataatatcaatgatatgaaagtgttgatta |
31113020 |
T |
|
| Q |
391 |
tatgtattggttctagaaataaaacagtaagcaagacaattgat |
434 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
31113021 |
tatgaattggttctagcaataaaatgctaagcaagacaattgat |
31113064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 28223430 - 28223695
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaat |
118 |
Q |
| |
|
||||||| | |||||||||| |||| ||||||||||||||||||| | | ||| ||| | || | |||||||| |||| || || ||||||||||||| |
|
|
| T |
28223430 |
gtttggctatttaagcacttacaaaacagcttaattaccatttaatcccctttaccatgattagaccagcttattctttttccattgctcatataccaat |
28223529 |
T |
|
| Q |
119 |
ataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaacttatg |
218 |
Q |
| |
|
|| ||| | | ||||| || ||||||||| | |||||||| || || ||||||||| ||||||| ||||||||| | |||| || |||||||| |
|
|
| T |
28223530 |
tcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccaatttaagctattatccaaagggtttaactaggaacttatg |
28223629 |
T |
|
| Q |
219 |
gcttctatcaaattaagttcgacccaaccattaacacaacagttccaaaatgtataatcagcccta |
284 |
Q |
| |
|
||| | ||| || || |||||||||| | |||||||| ||||||| ||||||| | ||||||| |
|
|
| T |
28223630 |
acttttttcatatcaaattcgacccaaactttaacacagatgttccaacatgtatagtaagcccta |
28223695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 33295453 - 33295401
Alignment:
| Q |
192 |
tccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgaccca |
244 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
33295453 |
tccaaacagcttaattagcagcttatggcttctatcaaattaatttcgaccca |
33295401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 29933872 - 29933810
Alignment:
| Q |
192 |
tccaaacagcttaattaaaaacttatggcttctatcaaattaagttcgacccaaccattaaca |
254 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
29933872 |
tccaaaaagcttaattagcagcttatggcttctatcaaattaatttcgacccagcctttaaca |
29933810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 8520445 - 8520503
Alignment:
| Q |
195 |
aaacagcttaattaaaaacttatggcttctatcaaattaagttcgacccaaccattaaca |
254 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
8520445 |
aaacagcttaattacag-cttatggcttctatcaaattaatttcgacccagcctttaaca |
8520503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 39707 - 39795
Alignment:
| Q |
347 |
gaatgaaactttatatgatatcaatgttatgaaagtgttgatcatatgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| |||||| || |||||||| ||||||| | |||||||| || |||||| |
|
|
| T |
39707 |
gaatgaaattttatttgatatcaatgttatgaaagtgttgttcatataaatgggttctagcaataaaatactaagcaaggcagttgatg |
39795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 23928 - 24193
Alignment:
| Q |
19 |
gtttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaat |
118 |
Q |
| |
|
||||||| | |||||||||| |||| ||||||||||||||||||| | | ||| ||| | || | |||||||| |||| || || ||||||||||||| |
|
|
| T |
23928 |
gtttggctatttaagcacttacaaaacagcttaattaccatttaatcccctttaccatgattagaccagcttattctttttccattgctcatataccaat |
24027 |
T |
|
| Q |
119 |
ataatatacctcccctaagttggtcatcacaatactatacctgaaacggctcaaattccaacttaagcttttatccaaacagcttaattaaaaacttatg |
218 |
Q |
| |
|
|| ||| | | ||||| || ||||||||| | |||||||| || || ||||||||| ||||||| ||||||||| | |||| || |||||||| |
|
|
| T |
24028 |
tcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccaatttaagctattatccaaagggtttaactaggaacttatg |
24127 |
T |
|
| Q |
219 |
gcttctatcaaattaagttcgacccaaccattaacacaacagttccaaaatgtataatcagcccta |
284 |
Q |
| |
|
||| | ||| || || |||||||||| | |||||||| ||||||| ||||||| | ||||||| |
|
|
| T |
24128 |
acttttttcatatcaaattcgacccaaactttaacacagatgttccaacatgtatagtaagcccta |
24193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 69543 - 69615
Alignment:
| Q |
361 |
atgatatcaatgttatgaaagtgttgatcatatgtattggttctagaaataaaacagtaagcaagacaattgatg |
435 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||||||| ||||||| | ||||||||| |||||||| |
|
|
| T |
69543 |
atgatatcaat--tatgaaagtgttgatgatatgaattggttctaacaataaaatactaagcaagaaaattgatg |
69615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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