View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21593_low_10 (Length: 328)
Name: NF21593_low_10
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21593_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 103 - 307
Target Start/End: Original strand, 36192191 - 36192397
Alignment:
| Q |
103 |
ttaagttacattccgaacaccagcatgacccacgatggttttaaagactgcatgtattgtattttctcaattatgttcaacctgctctcaagtctcacct |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36192191 |
ttaagttacattccgaacaccagcatgacccacgatggttttaaagactgcatgtattgtattttttcaattatgttcaacctgctctcaagtctcacct |
36192290 |
T |
|
| Q |
203 |
attgg--ttctctctcttccttctgtctatctttcaaccgtcatcatctttcgggctctcaccaccacttgttatagtatcaatatcttaatttgttttt |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36192291 |
attggctctctctctcttccttctgtctatctttcaaccgtcatcatctttcgggctctcaccaccacttgttatagtatcaatatcttaatttgttttt |
36192390 |
T |
|
| Q |
301 |
ccatcaa |
307 |
Q |
| |
|
||||||| |
|
|
| T |
36192391 |
ccatcaa |
36192397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 11135904 - 11135999
Alignment:
| Q |
157 |
tattgtattttctcaattatgttcaacctgctctcaagtctcacctattggttctctctcttccttctgtctatctttcaaccgtcatcatctttc |
252 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
11135904 |
tattgtattttttcaattatgttcaacctgctctcaagtctcaccttttggttctctcttttccttctgtctatcttttaacagtcatcatctttc |
11135999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 7281422 - 7281583
Alignment:
| Q |
152 |
gcatgtattgtattttct-caattatgttcaacctgctctcaagtctcacctattggttctctctcttccttctgtctatctttcaaccgtcatcatctt |
250 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
7281422 |
gcatgtattgtatttttttcaattatgtttaacctgctctcaagtctcaccttttggttctc--tcttccttttgtctatcttttaaccgtcatcatctt |
7281519 |
T |
|
| Q |
251 |
tcgggctctca-------ccaccacttgttatagtatcaatatcttaatttgtttttccatcaa |
307 |
Q |
| |
|
|| |||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
7281520 |
tcaggctctcaccactcgccaccacttgttatattatcaatactttaatttgtttttccatcaa |
7281583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 12869893 - 12869930
Alignment:
| Q |
71 |
ttaagccacgtcggatttaacacctgcgtgacttaagt |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12869893 |
ttaagccacgttggatttaacacctgcgtgacttaagt |
12869930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 25075017 - 25075061
Alignment:
| Q |
65 |
catgatttaagccacgtcggatttaacacctgcgtgacttaagtt |
109 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
25075017 |
catgatttaagtcacgttggatttaacatctgcgtgacttaagtt |
25075061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 13987437 - 13987390
Alignment:
| Q |
64 |
gcatgatttaagccacgtcggatttaacacctgcgtgacttaagttac |
111 |
Q |
| |
|
|||||| ||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
13987437 |
gcatgacttaagtcacgttgggtttaacacctgcgtgacttaagttac |
13987390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University