View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21593_low_12 (Length: 249)

Name: NF21593_low_12
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21593_low_12
NF21593_low_12
[»] chr4 (3 HSPs)
chr4 (9-249)||(4848692-4848932)
chr4 (37-124)||(5198115-5198202)
chr4 (131-249)||(5198896-5199013)
[»] chr5 (2 HSPs)
chr5 (12-224)||(34272265-34272477)
chr5 (189-226)||(15027074-15027111)
[»] chr8 (3 HSPs)
chr8 (80-214)||(32848027-32848160)
chr8 (11-84)||(26998297-26998369)
chr8 (111-155)||(18272607-18272651)
[»] chr6 (3 HSPs)
chr6 (164-220)||(6919348-6919404)
chr6 (44-125)||(8171228-8171309)
chr6 (163-200)||(10086110-10086147)
[»] chr7 (4 HSPs)
chr7 (164-209)||(39773206-39773251)
chr7 (22-124)||(40232503-40232605)
chr7 (16-77)||(29367313-29367374)
chr7 (163-224)||(43118995-43119056)
[»] chr1 (1 HSPs)
chr1 (164-210)||(29274505-29274551)
[»] chr2 (1 HSPs)
chr2 (28-82)||(8258821-8258875)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 4848932 - 4848692
Alignment:
Q  9 gaaaaatatagaggaagactaagtctaaagatttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttataccta 108  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  4848932 gaaaaatatagaggaagactaagtctaaagacttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttgttccta 4848833  T
Q  109 ttattgatcaccatttctatacttatgcataatccaagcttccttgannnnnnnaatcactagccacatgtccatttgtgtcaaccaattatgttatgcc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||    
T  4848832 ttattgatcaccatttctatacttatgcataatccaagcttccttgatttttttaatcactagccacatgtccatttgcgtcaaccaattatgttatgcc 4848733  T
Q  209 aaatgtgttttctcatgttattttcaatcatagcattgcac 249  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  4848732 aaatgtattttctcatgttattttcaatcatagcattgcac 4848692  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 5198115 - 5198202
Alignment:
Q  37 agatttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttatacctattattgatcaccattt 124  Q
    ||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5198115 agatttaagtcattactctacatgagagtactaaagagagaggagagatttcaacaattttctttatacctattattgatcaccattt 5198202  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 5198896 - 5199013
Alignment:
Q  131 ttatgcataatccaagcttccttgannnnnnnaatcactagccacatgtccatttgtgtcaaccaattatgttatgccaaatgtgttttctcatgttatt 230  Q
    ||||||||||||||||||||| |||       ||||||||||||||||||||||||  |||||||||||||||||||| | ||| |||||||||||||||    
T  5198896 ttatgcataatccaagcttccatgatttttt-aatcactagccacatgtccatttgcctcaaccaattatgttatgccgagtgtattttctcatgttatt 5198994  T
Q  231 ttcaatcatagcattgcac 249  Q
    |||||||||| ||||||||    
T  5198995 ttcaatcataacattgcac 5199013  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 34272477 - 34272265
Alignment:
Q  12 aaatatagaggaagactaagtctaaagatttaagtcattactgtacaagagagtactaaa--gagagaaaagagatttcaacaattttctttatacctat 109  Q
    ||||||| | |||||||||||| ||||| ||||||||||||| | | |||||||||||||  |||||| |  | | |||| |||||||||| ||||| ||    
T  34272477 aaatataaaagaagactaagtc-aaagacttaagtcattactcttctagagagtactaaatggagagagagaaaaattcatcaattttcttcatacccat 34272379  T
Q  110 tattgatcaccatttctatacttatgcataatccaagcttccttgannnnnnnaatcactagccacatgtccatttgtgtcaaccaattatgttatgcca 209  Q
    ||||  | | ||||| | || ||||||| |||| |||| |||||||       | ||||||| |||||||||||||   | |||||||||||||||||||    
T  34272378 tattatttatcatttttctatttatgcacaatctaagcatccttgattttagga-tcactagtcacatgtccatttacctaaaccaattatgttatgcca 34272280  T
Q  210 aatgtgttttctcat 224  Q
    ||||| |||||||||    
T  34272279 aatgtattttctcat 34272265  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 15027074 - 15027111
Alignment:
Q  189 tcaaccaattatgttatgccaaatgtgttttctcatgt 226  Q
    |||||||||||||||||||||||||| |||||||||||    
T  15027074 tcaaccaattatgttatgccaaatgtattttctcatgt 15027111  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 32848027 - 32848160
Alignment:
Q  80 agagatttcaacaattttctttatacctattattgatcaccatttctatacttatgcataatccaagcttccttgannnnnnnaatcactagccacatgt 179  Q
    ||||| |||| |||||||||| ||||| ||||||||||| ||||||| || ||||||| ||||||| |||||||||        ||||  ||||||||||    
T  32848027 agagagttcatcaattttcttgatacccattattgatcatcatttctctatttatgcacaatccaaacttccttgattttagg-atcatgagccacatgt 32848125  T
Q  180 ccatttgtgtcaaccaattatgttatgccaaatgt 214  Q
     |||||   ||||||||| ||||||||||||||||    
T  32848126 tcatttacctcaaccaatgatgttatgccaaatgt 32848160  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 26998369 - 26998297
Alignment:
Q  11 aaaatatagaggaagactaagtctaaagatttaagtcattactgtacaagagagtactaaagagagaaaagaga 84  Q
    |||||| ||| ||||||||||||| || | | ||| ||||||| ||| ||||||||||||||||||| ||||||    
T  26998369 aaaatacagaagaagactaagtcttaaaact-aagccattactttactagagagtactaaagagagagaagaga 26998297  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 18272651 - 18272607
Alignment:
Q  111 attgatcaccatttctatacttatgcataatccaagcttccttga 155  Q
    |||||||| ||||||  || |||||||||||||||||||||||||    
T  18272651 attgatcatcatttcgttatttatgcataatccaagcttccttga 18272607  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 6919404 - 6919348
Alignment:
Q  164 atcactagccacatgtccatttgtgtcaaccaattatgttatgccaaatgtgttttc 220  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| ||| |||||    
T  6919404 atcactagccacatgtccatttgcctcaaccaattatgttatgccaagtgtattttc 6919348  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 8171309 - 8171228
Alignment:
Q  44 agtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttatacctattattgatcaccatttc 125  Q
    |||||||||| ||| ||||| |||||||||||||  ||||| ||||  |||||||| |||||| ||||||||||| ||||||    
T  8171309 agtcattactctactagagaatactaaagagagaggagagacttcataaattttctatatacccattattgatcaacatttc 8171228  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 10086147 - 10086110
Alignment:
Q  163 aatcactagccacatgtccatttgtgtcaaccaattat 200  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  10086147 aatcactagccacatgtccatttatctcaaccaattat 10086110  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 39773251 - 39773206
Alignment:
Q  164 atcactagccacatgtccatttgtgtcaaccaattatgttatgcca 209  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  39773251 atcactagccacatgtccatttttctcaaccaattatgttatgcca 39773206  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 40232503 - 40232605
Alignment:
Q  22 gaagactaagtctaaagatttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttatacctattattgatcacca 121  Q
    |||||| ||||| || || |||| |||||||||||  |  ||||||| || ||||||||||||||| | |||||||| || |||| ||||||||||| ||    
T  40232503 gaagacaaagtcgaatgacttaaatcattactgtattattgagtactcaaaagagaaaagagatttaatcaattttccttgtacccattattgatcatca 40232602  T
Q  122 ttt 124  Q
    |||    
T  40232603 ttt 40232605  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 29367313 - 29367374
Alignment:
Q  16 atagaggaagactaagtctaaagatttaagtcattactgtacaagagagtactaaagagaga 77  Q
    ||||| ||||||||||||  |||| ||||||||||||| ||| |||||||| ||||||||||    
T  29367313 atagaagaagactaagtcctaagacttaagtcattactctactagagagtattaaagagaga 29367374  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 43118995 - 43119056
Alignment:
Q  163 aatcactagccacatgtccatttgtgtcaaccaattatgttatgccaaatgtgttttctcat 224  Q
    |||||||||||| |||||||||| | ||||| | | |||||||| ||||||||||| |||||    
T  43118995 aatcactagccatatgtccatttatatcaacgagtgatgttatgtcaaatgtgtttcctcat 43119056  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 29274551 - 29274505
Alignment:
Q  164 atcactagccacatgtccatttgtgtcaaccaattatgttatgccaa 210  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||    
T  29274551 atcactggccacatgtccatttgtctcaaccaaatatgttatgccaa 29274505  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 8258875 - 8258821
Alignment:
Q  28 taagtctaaagatttaagtcattactgtacaagagagtactaaagagagaaaaga 82  Q
    |||||| ||||| || |||||||||| |||||||||||| |||||| ||||||||    
T  8258875 taagtccaaagacttgagtcattactctacaagagagtattaaagacagaaaaga 8258821  T

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