View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21593_low_5 (Length: 404)

Name: NF21593_low_5
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21593_low_5
NF21593_low_5
[»] chr4 (4 HSPs)
chr4 (20-299)||(31737190-31737469)
chr4 (104-207)||(13852294-13852397)
chr4 (365-397)||(31737092-31737124)
chr4 (39-81)||(55351269-55351311)
[»] chr6 (2 HSPs)
chr6 (83-291)||(8247039-8247247)
chr6 (144-180)||(14457238-14457274)
[»] chr7 (1 HSPs)
chr7 (76-222)||(12829238-12829388)
[»] chr1 (3 HSPs)
chr1 (80-227)||(40197872-40198019)
chr1 (28-81)||(40388157-40388210)
chr1 (143-259)||(40387947-40388063)
[»] chr5 (2 HSPs)
chr5 (77-243)||(29299614-29299780)
chr5 (40-77)||(10428279-10428316)
[»] scaffold0263 (1 HSPs)
scaffold0263 (39-81)||(8633-8675)
[»] chr8 (2 HSPs)
chr8 (83-225)||(4901708-4901850)
chr8 (76-258)||(25659795-25659977)
[»] chr3 (1 HSPs)
chr3 (28-81)||(49454579-49454632)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 31737469 - 31737190
Alignment:
Q  20 agatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737469 agatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatg 31737370  T
Q  120 ctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatcttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737369 ctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatcttt 31737270  T
Q  220 gcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta 299  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737269 gattggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta 31737190  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 13852294 - 13852397
Alignment:
Q  104 tttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggatt 203  Q
    ||||||||||| ||||||||||||||  |||||||    ||||| || |||||||||||||| ||||||||||| || || ||  |||  ||||||||||    
T  13852294 tttgatcaatttcatgctaatgaggtgctaccaaagtccatgttggcgtattttgttgctttaattccaaaagtgtcttcacctttggagttgaaggatt 13852393  T
Q  204 atcg 207  Q
    ||||    
T  13852394 atcg 13852397  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 31737124 - 31737092
Alignment:
Q  365 tactgtatgggtgcgctactgctgtctgtgctg 397  Q
    |||||||||||||||||||||||||||||||||    
T  31737124 tactgtatgggtgcgctactgctgtctgtgctg 31737092  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 55351269 - 55351311
Alignment:
Q  39 agatagtgacggtaataaaagtccgggtccggatggttttaat 81  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  55351269 agatagtgatggtaataaaagcccgggtccggatggatttaat 55351311  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 291
Target Start/End: Complemental strand, 8247247 - 8247039
Alignment:
Q  83 aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat 182  Q
    ||||||||||||| |||||| || |||||||| |||||||||||| | ||| ||||||| ||||| |  ||||||||||| |||||  | ||||||||||    
T  8247247 aaggatgaggtgatgattttgttcgatcaatttcatgctaatgagattatatcaaaaggaatgttggtgtattttgttgcattgatatcgaaagtttcat 8247148  T
Q  183 ctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaa 282  Q
    |||| |||||| |||||||||| ||  |||| || ||||| ||| |||||||||||||||| ||||| ||| || ||||||||||||| ||  | |||||    
T  8247147 ctccaatggctatgaaggattaccgctctatttcattgctaggtagtttatacaaattactcgccaaagttttaacaaggcgtttggcgggaattatgaa 8247048  T
Q  283 ttcgattat 291  Q
    ||| |||||    
T  8247047 ttctattat 8247039  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 14457238 - 14457274
Alignment:
Q  144 tgttagcttattttgttgctttgattccaaaagtttc 180  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  14457238 tgttggcttattttgtggctttgattccaaaagtttc 14457274  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 12829388 - 12829238
Alignment:
Q  76 tttaatcaaggatgaggtgaggattttat----ttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattcc 171  Q
    ||||||||||||||||||| ||||| |||    |||||||||| ||||  ||||||| ||| ||||||||  ||||||| ||||||||||||||||||||    
T  12829388 tttaatcaaggatgaggtgcggattatatatgtttgatcaatttcatgggaatgaggaaatcccaaaaggtttgttagcgtattttgttgctttgattcc 12829289  T
Q  172 aaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgct 222  Q
      ||||||||||||| | ||||||||||||||| |  ||||| ||||||||    
T  12829288 ggaagtttcatctcctagggctttgaaggattaccaccctatttctttgct 12829238  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 40198019 - 40197872
Alignment:
Q  80 atcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagttt 179  Q
    ||||| ||||||||||| ||| | ||||| ||||| |||| |||||||||| | || |  |||||||| |||||||||||||| || ||||| |||||||    
T  40198019 atcaaagatgaggtgagaattatgtttgaccaatttcatggtaatgaggtatttccgagggggatgttggcttattttgttgcgttaattcctaaagttt 40197920  T
Q  180 catctccgatggctttgaaggattatcgtcctatatctttgcttggtt 227  Q
      || || |||||||||| ||||| ||  || || |||||||||||||    
T  40197919 tgtcccctatggctttgagggattttcaaccgatttctttgcttggtt 40197872  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 40388210 - 40388157
Alignment:
Q  28 gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 81  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  40388210 gcggtggttagagatagtgatggtaataaaagtccgtgtccggatggttttaat 40388157  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 40388063 - 40387947
Alignment:
Q  143 atgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattac 242  Q
    ||||| |||| ||||||  |||||||||| ||||| |||||| |||||| ||||||||||| | | || ||||  ||||| || || ||||| |||||||    
T  40388063 atgttggctttttttgtgactttgattcccaaagtgtcatcttcgatggatttgaaggattttaggccaatattcttgctaggatgcttatataaattac 40387964  T
Q  243 ttgccaaggttctagca 259  Q
    | ||||||||| |||||    
T  40387963 tagccaaggttttagca 40387947  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 29299614 - 29299780
Alignment:
Q  77 ttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaag 176  Q
    ||||| |||||||||||||||||| | ||||||||||| ||||||||||||||  | |||| | |  | |||||||||||||| |||||||| ||||| |    
T  29299614 ttaatgaaggatgaggtgaggattatgtttgatcaattacatgctaatgaggtggtgccaagaagtttattagcttattttgtcgctttgatcccaaagg 29299713  T
Q  177 tttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattact 243  Q
    | || || ||||||   |||||||| | |||||| || ||| | |||||| || | ||||| |||||    
T  29299714 tgtcctcaccgatgatgttgaaggactttcgtccaatttctctacttggtagtatttacaagttact 29299780  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 10428279 - 10428316
Alignment:
Q  40 gatagtgacggtaataaaagtccgggtccggatggttt 77  Q
    |||||||||||  |||||||||||||||||||||||||    
T  10428279 gatagtgacggcgataaaagtccgggtccggatggttt 10428316  T

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Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 8675 - 8633
Alignment:
Q  39 agatagtgacggtaataaaagtccgggtccggatggttttaat 81  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  8675 agatagtgatggtaataaaagtccgggtccggatggttttaat 8633  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 4901708 - 4901850
Alignment:
Q  83 aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat 182  Q
    |||||||| || || ||| | ||||||||||| || |||||||||||  |||| ||  | ||||||||||| ||||| ||||| ||||||||  |||| |    
T  4901708 aaggatgaagttagaattatgtttgatcaatttcacgctaatgaggttttaccgaagagtatgttagcttactttgtagctttaattccaaagatttctt 4901807  T
Q  183 ctccgatggctttgaaggattatcgtcctatatctttgcttgg 225  Q
    | ||  ||||||| ||||||| |||||| || |||||||||||    
T  4901808 cccctttggcttttaaggattttcgtcccatttctttgcttgg 4901850  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 258
Target Start/End: Original strand, 25659795 - 25659977
Alignment:
Q  76 tttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaa 175  Q
    |||||| || ||||| ||||| ||||| ||||| ||||| ||||||||||||||  | || | ||| ||||| |||||||||||  |||| ||| | |||    
T  25659795 tttaattaaagatgaagtgagaattttgtttgaccaatttcatgctaatgaggtgttgccgagaggtatgttggcttattttgtgactttaattactaaa 25659894  T
Q  176 gtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagc 258  Q
    || || || ||  |||  |||||||||||| | || || || |||||||| ||| | || ||| ||||||| ||||| |||||    
T  25659895 gtctcgtcccctttggagttgaaggattatagaccgatttccttgcttggatgtctctataaaatacttgcaaaggtcctagc 25659977  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 49454579 - 49454632
Alignment:
Q  28 gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 81  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||| |||||||    
T  49454579 gcggtggtgagagatagtgatggtggtaaaagcccgggtccggatgcttttaat 49454632  T

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