View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21593_low_8 (Length: 339)

Name: NF21593_low_8
Description: NF21593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21593_low_8
NF21593_low_8
[»] chr6 (13 HSPs)
chr6 (1-323)||(5100365-5100686)
chr6 (1-228)||(5135559-5135787)
chr6 (62-284)||(5351846-5352065)
chr6 (70-200)||(5242120-5242249)
chr6 (75-220)||(5398520-5398660)
chr6 (75-139)||(5687599-5687661)
chr6 (62-136)||(5334567-5334640)
chr6 (136-228)||(5155662-5155755)
chr6 (135-184)||(2939370-2939419)
chr6 (137-167)||(5098691-5098721)
chr6 (266-314)||(2939463-2939510)
chr6 (266-314)||(5155616-5155663)
chr6 (239-283)||(5427325-5427369)
[»] chr3 (4 HSPs)
chr3 (75-166)||(47985060-47985151)
chr3 (75-166)||(47994347-47994438)
chr3 (75-166)||(48003634-48003725)
chr3 (75-166)||(48012919-48013010)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 5100686 - 5100365
Alignment:
Q  1 tatgatgactgctaacaattgttttccacttatggcttacaggtcgctctgtcattgtctgatttttggtctgtagtttctagattttatcctgggtgaa 100  Q
    |||||||||||||||||||||||||||| || ||||||||| |  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5100686 tatgatgactgctaacaattgttttccatttttggcttacaagctgctttgtcattgtctgatttttggtctgtagtttctagattttatccttggtgaa 5100587  T
Q  101 tttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100586 tttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaa 5100487  T
Q  201 atag-tatagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatagctgccaagaataaactctgatttgaacaatgagcatttt 299  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  5100486 atagttatagcatttaaatgtttagc-aaacttctgtagtcctaaataataggatatatagctgccaagaagaaactctgatttgaacaatgagca-ttt 5100389  T
Q  300 tacctcagcatcagattttatagt 323  Q
    |||||||||||||| |||||||||    
T  5100388 tacctcagcatcaggttttatagt 5100365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5135787 - 5135559
Alignment:
Q  1 tatgatgactgctaacaattgttttccacttatggcttacaggtcgctctgtcattgtctgatttttggtctgtagtttctagattttatcctgggtgaa 100  Q
    |||||||||||||||||||||||||||| || ||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  5135787 tatgatgactgctaacaattgttttccatttttggcttacaagctgctctgtcattgtctgatttttggtctgtagtttctagattttattcttggtgaa 5135688  T
Q  101 tttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaa 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5135687 tttttgtattcaaaaagagttctgaaagattctaatttgttctgttacaattcttccatgttatataccatttaaatgtcttttaacaaaatggactcaa 5135588  T
Q  201 atag-tatagcatttaaatgtttagcaaa 228  Q
    |||| ||||||||||||||||||||||||    
T  5135587 atagttatagcatttaaatgtttagcaaa 5135559  T

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Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 62 - 284
Target Start/End: Original strand, 5351846 - 5352065
Alignment:
Q  62 atttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgt 161  Q
    |||||||| ||||||||||| ||||||||||  | ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  5351846 atttttgg-ctgtagtttcttgattttatccatgttgaattttt-tattcacaaagagtggtgaaagattctaatttgttctgttacaattgttccatgt 5351943  T
Q  162 catataccatttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatag 260  Q
    ||| ||| ||||||| ||||||||||||||||| ||   |||| || |||||||||||||| || ||| |||||||| || | ||| |||| ||||||      
T  5351944 catgtactatttaaaagtcttttaacaaaatgggct-ttatagttacagcatttaaatgttaag-aaagcttctgtactcatgaatgatagcatatatga 5352041  T
Q  261 ctgccaagaataaactctgatttg 284  Q
    |||||||||| |||||||||||||    
T  5352042 ctgccaagaagaaactctgatttg 5352065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 5242249 - 5242120
Alignment:
Q  70 tctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatatacc 169  Q
    |||||||||||||||||||||||  ||||||||||| |||| ||| |||||  |||||| |||||||||||| ||||| ||||||| |||||||| ||||    
T  5242249 tctgtagtttctagattttatccatggtgaattttt-tattgacagagagtggtgaaagtttctaatttgttatgttataattctttcatgtcatgtacc 5242151  T
Q  170 atttaaatgtcttttaacaaaatggactcaa 200  Q
    ||||||||||||||||||||||||| |||||    
T  5242150 atttaaatgtcttttaacaaaatgggctcaa 5242120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 5398520 - 5398660
Alignment:
Q  75 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccattta 174  Q
    ||||||||||||||||||  ||||||||||| ||||||    ||||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  5398520 agtttctagattttatccatggtgaattttt-tattca----gagtggtgaaagattctaatttgttctgttacaattcttccatgtcatgtactattta 5398614  T
Q  175 aatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgt 220  Q
    || |||||||||| |||||||||| ||||| |||||||||| |||||    
T  5398615 aaagtcttttaactaaatggactc-aatagttatagcatttcaatgt 5398660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 5687599 - 5687661
Alignment:
Q  75 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttg 139  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  5687599 agtttctagattttatcc--ggtgaatttttgtattcacaaagagttttgaaagattctaatttg 5687661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 5334567 - 5334640
Alignment:
Q  62 atttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaat 136  Q
    |||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||    
T  5334567 atttttgg-ctgaagtttctagattttatccatggtgaatttttgtattcacaaagagtggtgaaagattctaat 5334640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 5155755 - 5155662
Alignment:
Q  136 tttgttctgttacaattcttccatgtcatataccatttaaatgtc-ttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaa 228  Q
    |||||||||||||||||| |||||||||  |||||||||||| || ||||||| |||||||||  ||||| ||||| || |||||||||||||||    
T  5155755 tttgttctgttacaattcgtccatgtcacgtaccatttaaatatctttttaaccaaatggact-gaatagctatagtatctaaatgtttagcaaa 5155662  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 2939370 - 2939419
Alignment:
Q  135 atttgttctgttacaattcttccatgtcatataccatttaaatgtctttt 184  Q
    |||||||||||||| |||| |||||||||| |||||||||||| ||||||    
T  2939370 atttgttctgttacgattcatccatgtcatgtaccatttaaatatctttt 2939419  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 5098691 - 5098721
Alignment:
Q  137 ttgttctgttacaattcttccatgtcatata 167  Q
    |||||||||||||||||||||||||||||||    
T  5098691 ttgttctgttacaattcttccatgtcatata 5098721  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 2939463 - 2939510
Alignment:
Q  266 aagaataaactctgatttgaacaatgagcatttttacctcagcatcaga 314  Q
    ||||| |||||||||||||| || |||||| ||||||||||||||||||    
T  2939463 aagaagaaactctgatttgagcagtgagca-ttttacctcagcatcaga 2939510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 5155663 - 5155616
Alignment:
Q  266 aagaataaactctgatttgaacaatgagcatttttacctcagcatcaga 314  Q
    ||||| ||| |||||||||| ||||||||| ||||||||||||||||||    
T  5155663 aagaagaaaatctgatttgagcaatgagca-ttttacctcagcatcaga 5155616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 5427325 - 5427369
Alignment:
Q  239 tcctaaataataggatatatagctgccaagaataaactctgattt 283  Q
    |||| ||| ||||||||||| ||||||||||| ||||||||||||    
T  5427325 tcctgaatgataggatatatggctgccaagaagaaactctgattt 5427369  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 47985151 - 47985060
Alignment:
Q  75 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 166  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  47985151 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 47985060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 47994438 - 47994347
Alignment:
Q  75 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 166  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  47994438 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 47994347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 48003725 - 48003634
Alignment:
Q  75 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 166  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  48003725 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 48003634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 48013010 - 48012919
Alignment:
Q  75 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 166  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  48013010 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 48012919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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