View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21594_high_14 (Length: 256)
Name: NF21594_high_14
Description: NF21594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21594_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 32243400 - 32243155
Alignment:
| Q |
1 |
gacaaaatctctcgtatctgtgaacatggccccaaagggcaagggacacattgttattcaccaacagaggttccaagtgctccaacatctgttctcttaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32243400 |
gacaaaatctctcgtatctatgaacatggccccaaagggcaagggacacattgttattcaccaatagaggttccaagtgctccaacatctgttctcttaa |
32243301 |
T |
|
| Q |
101 |
cagaacatccttggttccattaattgttgtgtacataggtcggtgcccttggacaactacaaaaggagtcttgttcctatcaactgattccagatcatgc |
200 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
32243300 |
cagaacatccttggttccgttgattgtggtgtacataggtcggtgcccttggactactacaaaaggagtcttgttcctgtcaactgattccaaatcatgc |
32243201 |
T |
|
| Q |
201 |
ttcaagaagttatattggttgctcccaagaagaaaattggtctctg |
246 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32243200 |
ttcaagaagttatactggttgctcccaagaagaaaattggtctctg |
32243155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 32248481 - 32248236
Alignment:
| Q |
1 |
gacaaaatctctcgtatctgtgaacatggccccaaagggcaagggacacattgttattcaccaacagaggttccaagtgctccaacatctgttctcttaa |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||||||| |||| |||||||||||| |||||||||| |||||| | ||||| | ||||||| |
|
|
| T |
32248481 |
gacaaaatctctcgtacctatgaacatgaccccaaagggcaagggttacatggttattcaccaatagaggttccaggtgctcaaccatctttcctcttaa |
32248382 |
T |
|
| Q |
101 |
cagaacatccttggttccattaattgttgtgtacataggtcggtgcccttggacaactacaaaaggagtcttgttcctatcaactgattccagatcatgc |
200 |
Q |
| |
|
| | ||||| | | |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| || |
|
|
| T |
32248381 |
cgcagcatccctaaattcattgcttgttgtgtacatgggtcggtgcccttggactactacaaaaggagtcttgttcctgtcaactgattccaaatcacgc |
32248282 |
T |
|
| Q |
201 |
ttcaagaagttatattggttgctcccaagaagaaaattggtctctg |
246 |
Q |
| |
|
|| ||||||||||| || ||||||||| |||| ||||||||||||| |
|
|
| T |
32248281 |
tttaagaagttatactgattgctcccaggaaggaaattggtctctg |
32248236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University